Variant report

Variant	rs2295752
Chromosome Location	chr6:6249067-6249068
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs3024391	0.83[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.95[ASN][1000 genomes]
rs3851514	0.86[CHB][hapmap]
rs3863221	0.86[CEU][hapmap];0.81[CHB][hapmap]
rs7766109	0.86[CHB][hapmap];0.81[ASN][1000 genomes]
rs9379021	0.82[CHB][hapmap];0.80[JPT][hapmap]
rs9392764	0.80[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883421	chr6:6163492-6574384	Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv883422	chr6:6163492-6769930	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:6223600-6251600	Weak transcription	HSMM	muscle
2	chr6:6247200-6249800	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr6:6247600-6250400	Strong transcription	Primary monocytes fromperipheralblood	blood
4	chr6:6247600-6250800	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr6:6248200-6249600	Weak transcription	HSMMtube	muscle
6	chr6:6248600-6249200	Enhancers	GM12878-XiMat	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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