Variant report

Variant	rs229601
Chromosome Location	chr14:65233282-65233283
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr14:65233257-65233320	NHEK	skin:	n/a	n/a
2	ZNF263	chr14:65233239-65233805	HEK293-T-REx	kidney:	n/a	chr14:65233312-65233333 chr14:65233607-65233616
3	POLR2A	chr14:65233233-65233351	H1-hESC	embryonic stem cell:	n/a	n/a
4	SMC3	chr14:65233273-65233410	Hela-S3	cervix:	n/a	n/a
5	MYC	chr14:65233275-65233394	MCF-7	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr14:65231094..65233914-chr14:65437401..65439254,2	MCF-7	breast:
2	chr14:65231019..65234002-chr14:65270043..65272180,2	K562	blood:
3	chr14:65232750..65234740-chr14:65252170..65254812,2	MCF-7	breast:
4	chr14:65168335..65178043-chr14:65220677..65234710,31	MCF-7	breast:
5	chr14:65231204..65233670-chr14:65243872..65245658,2	MCF-7	breast:
6	chr14:64969741..64971347-chr14:65231667..65233544,2	MCF-7	breast:

Variant related genes	Relation type
SPTB	TF binding region
ENSG00000126822	Chromatin interaction
ENSG00000089775	Chromatin interaction
ENSG00000139998	Chromatin interaction
ENSG00000126804	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10148978	0.93[ASN][1000 genomes]
rs12883860	1.00[ASN][1000 genomes]
rs12884320	0.93[ASN][1000 genomes]
rs12885036	1.00[ASN][1000 genomes]
rs12889768	1.00[ASN][1000 genomes]
rs12892540	0.93[ASN][1000 genomes]
rs189086	0.93[ASN][1000 genomes]
rs229582	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs229598	0.87[ASN][1000 genomes]
rs229602	1.00[ASN][1000 genomes]
rs34132719	1.00[ASN][1000 genomes]
rs34494653	0.93[ASN][1000 genomes]
rs34935243	1.00[ASN][1000 genomes]
rs35621884	0.93[ASN][1000 genomes]
rs35752616	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1818582	chr14:65172898-65256685	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1035833	chr14:65176371-65246181	Enhancers Strong transcription Genic enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
3	esv1801406	chr14:65193725-65264416	Strong transcription Genic enhancers Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA	11 gene(s)	inside rSNPs	diseases
4	nsv902023	chr14:65200821-65243885	Strong transcription Genic enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
5	nsv902024	chr14:65200821-65244950	Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
6	nsv902025	chr14:65229364-65246181	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
7	nsv519823	chr14:65230059-65241933	Flanking Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
8	esv3356966	chr14:65230599-65234897	Weak transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65228400-65265000	Weak transcription	Aorta	Aorta
2	chr14:65228800-65234400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr14:65229200-65233600	Enhancers	HMEC	breast
4	chr14:65229600-65234000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr14:65229600-65234400	Weak transcription	Fetal Brain Female	brain
6	chr14:65229600-65246200	Weak transcription	Psoas Muscle	Psoas
7	chr14:65229800-65233600	Weak transcription	Left Ventricle	heart
8	chr14:65230600-65237800	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr14:65231600-65233400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr14:65231600-65233600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr14:65231600-65233600	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr14:65231600-65233600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
13	chr14:65231600-65234000	Weak transcription	Spleen	Spleen
14	chr14:65231600-65234000	Enhancers	A549	lung
15	chr14:65231600-65235600	Weak transcription	Brain Germinal Matrix	brain
16	chr14:65231600-65235800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr14:65231600-65237000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr14:65231600-65242400	Strong transcription	Right Ventricle	heart
19	chr14:65231600-65244000	Strong transcription	Skeletal Muscle Male	skeletal muscle
20	chr14:65231600-65244400	Strong transcription	Skeletal Muscle Female	skeletal muscle
21	chr14:65231600-65250600	Weak transcription	Brain Angular Gyrus	brain
22	chr14:65231600-65250600	Weak transcription	Brain Anterior Caudate	brain
23	chr14:65231600-65261400	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr14:65232000-65246000	Weak transcription	Pancreas	Pancrea
25	chr14:65232200-65233600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr14:65232200-65235400	Strong transcription	Fetal Muscle Leg	muscle
27	chr14:65232200-65237200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr14:65232200-65239400	Weak transcription	Brain Hippocampus Middle	brain
29	chr14:65232200-65244600	Weak transcription	Brain Cingulate Gyrus	brain
30	chr14:65232200-65274200	Weak transcription	Gastric	stomach
31	chr14:65232400-65233400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr14:65232400-65233600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr14:65232400-65233600	Strong transcription	Fetal Muscle Trunk	muscle
34	chr14:65232400-65237800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
35	chr14:65232600-65233600	Weak transcription	Colonic Mucosa	Colon
36	chr14:65232600-65234000	Enhancers	NHEK	skin
37	chr14:65232600-65237400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
38	chr14:65232600-65242600	Strong transcription	K562	blood
39	chr14:65232800-65233600	Enhancers	Placenta Amnion	Placenta Amnion
40	chr14:65233000-65233400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr14:65233000-65234000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
42	chr14:65233000-65235800	Enhancers	ES-I3 Cell Line	embryonic stem cell
43	chr14:65233000-65235800	Weak transcription	H9 Cell Line	embryonic stem cell
44	chr14:65233000-65237000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
45	chr14:65233000-65265600	Weak transcription	Fetal Brain Male	brain
46	chr14:65233200-65233400	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr14:65233200-65233600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr14:65233200-65233600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr14:65233200-65233800	Enhancers	Esophagus	oesophagus
50	chr14:65233200-65234000	Enhancers	HUES6 Cell Line	embryonic stem cell

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