Variant report

Variant	rs2296010
Chromosome Location	chr6:70873331-70873332
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:70861054..70863597-chr6:70870424..70874641,3	K562	blood:
2	chr6:70867487..70869606-chr6:70872055..70875188,3	K562	blood:
3	chr6:70872579..70876213-chr6:70878847..70881996,3	K562	blood:
4	chr6:70868106..70871581-chr6:70871760..70875101,3	K562	blood:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1064250	0.88[CEU][hapmap];0.87[TSI][hapmap];0.87[EUR][1000 genomes]
rs10945200	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1200575	0.96[CEU][hapmap];0.90[MEX][hapmap];0.93[TSI][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12192464	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12204439	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1517042	0.96[CEU][hapmap];0.90[MEX][hapmap];0.93[TSI][hapmap];0.88[YRI][hapmap];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1736	0.96[CEU][hapmap];0.90[MEX][hapmap];0.93[TSI][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2176355	0.96[CEU][hapmap];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2229799	0.82[CHD][hapmap]
rs2296005	0.96[CEU][hapmap];0.83[YRI][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34147000	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34437604	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3749913	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3793059	0.83[CEU][hapmap];0.85[EUR][1000 genomes]
rs3793064	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3806041	0.82[CHD][hapmap]
rs3806051	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.81[TSI][hapmap];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3806052	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.83[TSI][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3806064	0.83[YRI][hapmap];0.85[AMR][1000 genomes]
rs3806065	0.94[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap];0.83[YRI][hapmap];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4544872	0.89[EUR][1000 genomes]
rs6908735	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];0.98[TSI][hapmap];0.88[YRI][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6909913	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6920170	0.96[CEU][hapmap];0.84[LWK][hapmap];0.90[MEX][hapmap];0.89[MKK][hapmap];0.93[TSI][hapmap];0.88[YRI][hapmap];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6928201	0.84[CEU][hapmap];0.83[TSI][hapmap];0.85[EUR][1000 genomes]
rs6928404	0.82[CHD][hapmap]
rs6933155	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9342783	0.82[CHD][hapmap]
rs9354907	0.82[CHD][hapmap]
rs9354908	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9360412	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9360413	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9360414	0.96[CEU][hapmap];0.84[MEX][hapmap];0.93[TSI][hapmap];0.88[YRI][hapmap];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9360416	0.92[CEU][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9364075	0.84[EUR][1000 genomes]
rs9364077	0.91[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.82[YRI][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026151	chr6:70621616-70946967	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv933674	chr6:70663616-70973112	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv932111	chr6:70736835-71633094	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv886142	chr6:70741209-71251421	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	nsv830683	chr6:70743422-70941190	Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:70842400-70875200	Weak transcription	GM12878-XiMat	blood
2	chr6:70847600-70874800	Strong transcription	Primary B cells from peripheral blood	blood
3	chr6:70856200-70899400	Weak transcription	Left Ventricle	heart
4	chr6:70871400-70876000	Weak transcription	Fetal Lung	lung
5	chr6:70872800-70873400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr6:70872800-70876200	Weak transcription	Fetal Kidney	kidney
7	chr6:70873000-70875000	Flanking Active TSS	K562	blood
8	chr6:70873000-70875800	Strong transcription	Primary B cells from cord blood	blood
9	chr6:70873200-70874400	Enhancers	Pancreas	Pancrea

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