Variant report

Variant	rs2296020
Chromosome Location	chr1:192626826-192626827
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10754022	0.83[AMR][1000 genomes]
rs10754023	0.83[AMR][1000 genomes]
rs10921229	0.80[CEU][hapmap]
rs10921233	0.80[AMR][1000 genomes]
rs11576197	0.80[AMR][1000 genomes]
rs12042114	0.81[AMR][1000 genomes]
rs12118386	0.89[CEU][hapmap]
rs12403636	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1933712	0.82[AMR][1000 genomes]
rs1933713	0.80[AMR][1000 genomes]
rs1933714	0.83[AMR][1000 genomes]
rs1933715	0.80[AMR][1000 genomes]
rs2208960	0.83[AMR][1000 genomes]
rs2296021	0.96[CEU][hapmap];0.91[EUR][1000 genomes]
rs2369892	0.80[AMR][1000 genomes]
rs4147217	0.89[CEU][hapmap];0.84[EUR][1000 genomes]
rs7540755	0.81[EUR][1000 genomes]
rs7549322	0.82[AMR][1000 genomes]
rs9287126	0.96[CEU][hapmap];0.91[EUR][1000 genomes]
rs961480	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532618	chr1:192537006-193149179	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
2	nsv548660	chr1:192609268-192945348	Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:192624600-192627400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr1:192624600-192627600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr1:192626400-192627000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr1:192626800-192627200	Enhancers	Left Ventricle	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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