Variant report

Variant	rs229635
Chromosome Location	chr14:65250756-65250757
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:65250375..65252086-chr14:65255128..65257379,2	K562	blood:
2	chr14:65242147..65244989-chr14:65249995..65252297,2	K562	blood:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1626923	0.97[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1695764	0.94[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs170684	0.90[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs1741485	0.94[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs1741486	0.93[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs1741487	0.94[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs1741488	0.94[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs1741489	0.88[ASN][1000 genomes]
rs229629	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs229638	0.95[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs229640	0.88[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs229641	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs229642	0.94[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs229643	0.86[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs2357726	0.93[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs2357727	0.94[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs2884253	0.94[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs3819932	0.94[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs56361624	0.94[AFR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1818582	chr14:65172898-65256685	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA	11 gene(s)	inside rSNPs	diseases
2	esv1801406	chr14:65193725-65264416	Strong transcription Genic enhancers Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65228400-65265000	Weak transcription	Aorta	Aorta
2	chr14:65231600-65261400	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr14:65232200-65274200	Weak transcription	Gastric	stomach
4	chr14:65233000-65265600	Weak transcription	Fetal Brain Male	brain
5	chr14:65240400-65262800	Weak transcription	Brain Hippocampus Middle	brain
6	chr14:65242000-65251800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr14:65242400-65252600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr14:65244800-65272400	Weak transcription	Brain Cingulate Gyrus	brain
9	chr14:65245200-65257600	Weak transcription	HSMMtube	muscle
10	chr14:65246400-65253200	Weak transcription	Spleen	Spleen
11	chr14:65246600-65251000	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr14:65246600-65251000	Weak transcription	K562	blood
13	chr14:65246800-65252400	Weak transcription	Psoas Muscle	Psoas
14	chr14:65247000-65250800	Weak transcription	Right Ventricle	heart
15	chr14:65247000-65251000	Weak transcription	Fetal Heart	heart
16	chr14:65248800-65251200	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr14:65249000-65253000	Strong transcription	Skeletal Muscle Male	skeletal muscle
18	chr14:65249400-65253200	Strong transcription	Skeletal Muscle Female	skeletal muscle
19	chr14:65250000-65252200	Strong transcription	Fetal Brain Female	brain
20	chr14:65250400-65251400	Strong transcription	Brain Germinal Matrix	brain
21	chr14:65250400-65252800	Strong transcription	Left Ventricle	heart
22	chr14:65250400-65253200	Strong transcription	Fetal Muscle Trunk	muscle
23	chr14:65250400-65271800	Strong transcription	Fetal Muscle Leg	muscle
24	chr14:65250600-65251000	Strong transcription	Brain Angular Gyrus	brain
25	chr14:65250600-65251400	Strong transcription	Brain Anterior Caudate	brain

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