Variant report

Variant	rs2296487
Chromosome Location	chr14:103996205-103996206
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr14:103995145-103996331	Raji	blood:	n/a	n/a
2	REST	chr14:103995321-103997714	U87	brain:	n/a	chr14:103997267-103997287 chr14:103996914-103996927 chr14:103996943-103996957 chr14:103996937-103996957 chr14:103996937-103996946 chr14:103996970-103996984 chr14:103996937-103996957 chr14:103996937-103996957 chr14:103995670-103995683
3	POLR2A	chr14:103996107-103996571	MCF-7	breast:	n/a	n/a
4	REST	chr14:103995143-103997478	A549	lung:	n/a	chr14:103997267-103997287 chr14:103996914-103996927 chr14:103996943-103996957 chr14:103996937-103996957 chr14:103996937-103996946 chr14:103996970-103996984 chr14:103996937-103996957 chr14:103996937-103996957 chr14:103995670-103995683
5	ELF1	chr14:103994419-103997638	MCF-7	breast:	n/a	chr14:103995523-103995532 chr14:103995487-103995496 chr14:103995544-103995553 chr14:103995522-103995533 chr14:103995540-103995552 chr14:103995488-103995500 chr14:103995541-103995550
6	POLR2A	chr14:103996195-103996211	Hela-S3	cervix:	n/a	n/a
7	SMARCB1	chr14:103995081-103997015	Hela-S3	cervix:	n/a	n/a
8	POLR2A	chr14:103994449-103996359	MCF10A-Er-Src	breast:	n/a	n/a
9	POLR2A	chr14:103996110-103996533	MCF-7	breast:	n/a	n/a
10	SIN3A	chr14:103994987-103996278	H1-hESC	embryonic stem cell:	n/a	n/a
11	POLR2A	chr14:103994993-103996269	MCF10A-Er-Src	breast:	n/a	n/a
12	POLR2A	chr14:103994080-103996288	SK-N-MC	brain:	n/a	n/a
13	REST	chr14:103996026-103997712	U87	brain:	n/a	chr14:103997267-103997287 chr14:103996914-103996927 chr14:103996943-103996957 chr14:103996937-103996957 chr14:103996937-103996946 chr14:103996970-103996984 chr14:103996937-103996957 chr14:103996937-103996957
14	REST	chr14:103995193-103997535	MCF-7	breast:	n/a	chr14:103997267-103997287 chr14:103996914-103996927 chr14:103996943-103996957 chr14:103996937-103996957 chr14:103996937-103996946 chr14:103996970-103996984 chr14:103996937-103996957 chr14:103996937-103996957 chr14:103995670-103995683
15	MAX	chr14:103995239-103996339	NB4	blood:	n/a	chr14:103995561-103995571
16	MAX	chr14:103994440-103996416	A549	lung:	n/a	chr14:103995561-103995571
17	SIN3AK20	chr14:103994734-103996279	MCF-7	breast:	n/a	n/a
18	MAX	chr14:103996144-103996372	K562	blood:	n/a	n/a
19	MXI1	chr14:103995114-103996363	HepG2	liver:	n/a	n/a
20	MYC	chr14:103995017-103996224	A549	lung:	n/a	chr14:103995561-103995571
21	POLR2A	chr14:103996165-103996654	GM12891	blood:	n/a	n/a
22	ESRRA	chr14:103994512-103996444	GM12878	blood:	n/a	chr14:103994819-103994832 chr14:103995633-103995652 chr14:103995617-103995630 chr14:103994792-103994806 chr14:103994787-103994806 chr14:103995633-103995647 chr14:103995632-103995648 chr14:103995638-103995647 chr14:103995628-103995647
23	MYC	chr14:103995196-103996448	K562	blood:	n/a	chr14:103995561-103995571
24	MYC	chr14:103996138-103996461	MCF-7	breast:	n/a	n/a
25	MAX	chr14:103995010-103996390	HCT-116	colon:	n/a	chr14:103995561-103995571
26	MXI1	chr14:103994392-103997122	SK-N-SH	brain:	n/a	n/a
27	MXI1	chr14:103994501-103997427	IMR90	lung:	n/a	n/a
28	POLR2A	chr14:103990643-103996520	HepG2	liver:	n/a	n/a
29	POLR2A	chr14:103996045-103996619	GM12878	blood:	n/a	n/a
30	POLR2A	chr14:103994336-103996408	K562	blood:	n/a	n/a
31	REST	chr14:103995941-103997641	HL-60	blood:	n/a	chr14:103997267-103997287 chr14:103996914-103996927 chr14:103996943-103996957 chr14:103996937-103996957 chr14:103996937-103996946 chr14:103996970-103996984 chr14:103996937-103996957 chr14:103996937-103996957
32	POLR2A	chr14:103995087-103996722	GM12878	blood:	n/a	n/a
33	MAX	chr14:103994933-103996602	MCF-7	breast:	n/a	chr14:103995561-103995571
34	POLR2A	chr14:103995153-103996770	Hela-S3	cervix:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr14:103994810..103997176-chr14:104176629..104178794,2	MCF-7	breast:
2	chr14:103851236..103854697-chr14:103993929..103996210,3	MCF-7	breast:
3	chr14:103992721..103998040-chr14:104027797..104030842,4	MCF-7	breast:
4	chr14:103948825..103951654-chr14:103995758..103998626,2	K562	blood:
5	chr14:103995545..103997122-chr14:104028296..104030375,2	K562	blood:

Variant related genes	Relation type
ENSG00000260285	TF binding region
ENSG00000166170	Chromatin interaction
ENSG00000126214	Chromatin interaction
ENSG00000075413	Chromatin interaction
ENSG00000224997	Chromatin interaction
ENSG00000126215	Chromatin interaction
ENSG00000256053	Chromatin interaction

Extended variants
information (count: 92 )
Associated
traits (count: 7 )

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10459573	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs11160752	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11625172	0.81[ASN][1000 genomes]
rs12147596	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12879663	0.82[ASW][hapmap];0.93[CHD][hapmap];0.94[JPT][hapmap]
rs12880077	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12880224	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12885234	0.85[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap]
rs12885714	0.87[ASN][1000 genomes]
rs12885762	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs12885786	0.82[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs12891360	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12892062	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs12893668	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12896612	0.94[JPT][hapmap]
rs12896919	0.85[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs13987	0.85[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs17617832	0.81[ASN][1000 genomes]
rs17617935	0.84[ASN][1000 genomes]
rs17680085	0.84[ASN][1000 genomes]
rs2021965	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2065015	0.82[ASW][hapmap];0.85[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap]
rs2065017	0.85[CHB][hapmap];0.94[JPT][hapmap]
rs2065018	0.82[ASW][hapmap];0.85[CHB][hapmap];0.93[CHD][hapmap];0.94[JPT][hapmap]
rs2236281	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2246490	0.81[CHD][hapmap]
rs2403194	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2756138	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.96[TSI][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2765041	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34235720	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34347076	0.84[ASN][1000 genomes]
rs34372508	0.88[ASN][1000 genomes]
rs35126287	0.84[ASN][1000 genomes]
rs35344594	0.84[ASN][1000 genomes]
rs35466180	0.81[ASN][1000 genomes]
rs35771849	0.81[ASN][1000 genomes]
rs3783397	0.81[ASN][1000 genomes]
rs3783400	0.87[ASN][1000 genomes]
rs4906327	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs4906330	0.85[CHB][hapmap];0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs4906331	0.80[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs4906332	0.88[ASN][1000 genomes]
rs55930273	0.82[ASN][1000 genomes]
rs7140558	0.84[CEU][hapmap];0.89[CHB][hapmap];0.83[EUR][1000 genomes]
rs71417863	0.81[ASN][1000 genomes]
rs7155822	0.82[ASW][hapmap];0.85[CHB][hapmap];0.92[CHD][hapmap];1.00[JPT][hapmap];0.93[MKK][hapmap];1.00[YRI][hapmap]
rs7159665	0.90[ASN][1000 genomes]
rs7161305	1.00[CEU][hapmap];0.83[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7401563	0.84[ASN][1000 genomes]
rs8004501	0.81[ASN][1000 genomes]
rs8012127	0.85[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs8012623	0.81[ASN][1000 genomes]
rs911549	0.82[ASN][1000 genomes]
rs9324063	0.96[CEU][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];0.90[TSI][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:38 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534254	chr14:103470073-104023906	Bivalent Enhancer Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	125 gene(s)	inside rSNPs	diseases
2	esv3332028	chr14:103581471-104328811	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	162 gene(s)	inside rSNPs	diseases
3	nsv832883	chr14:103927687-104120953	Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
4	nsv1044967	chr14:103954727-104007051	Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
5	esv1807091	chr14:103956182-104020454	Enhancers Bivalent Enhancer Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
6	esv1835824	chr14:103956182-104020454	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
7	nsv902297	chr14:103956182-104061646	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
8	nsv902298	chr14:103959289-104061646	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
9	nsv902299	chr14:103967504-104061646	Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
10	nsv902300	chr14:103967504-104205811	Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
11	esv1834605	chr14:103969909-104003091	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
12	nsv902301	chr14:103979953-104003094	Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
13	esv1850440	chr14:103979953-104007555	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
14	nsv902302	chr14:103979953-104018455	Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
15	nsv902303	chr14:103979953-104034746	Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
16	nsv902304	chr14:103979953-104061646	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
17	nsv902305	chr14:103979953-104073551	Strong transcription Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
18	nsv827068	chr14:103982866-104021347	Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
19	nsv902306	chr14:103984294-104003094	Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
20	esv1835145	chr14:103984294-104014935	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
21	nsv902307	chr14:103986155-104003094	Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
22	esv1824096	chr14:103986255-103999371	Active TSS Bivalent/Poised TSS Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
23	esv1842368	chr14:103986255-103999371	Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
24	esv1834274	chr14:103987140-103996205	Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Weak transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
25	esv1834291	chr14:103987140-103999371	Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
26	esv1839917	chr14:103987140-103999371	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Flanking Active TSS Weak transcription Enhancers Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
27	esv1845597	chr14:103987140-103999371	Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
28	esv1851656	chr14:103987140-104007555	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
29	esv1839595	chr14:103987140-104034746	Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
30	esv1809007	chr14:103988059-103999371	Enhancers Genic enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
31	esv1818214	chr14:103988059-103999371	Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
32	esv1837939	chr14:103988059-103999371	Weak transcription Active TSS Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
33	esv1846909	chr14:103988059-103999371	Flanking Active TSS Active TSS Genic enhancers Enhancers Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
34	esv1794331	chr14:103988059-104004311	Weak transcription Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
35	nsv566020	chr14:103989279-103996396	Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
36	nsv566021	chr14:103989639-104012982	Active TSS Enhancers Flanking Active TSS Genic enhancers Strong transcription Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
37	esv1819920	chr14:103989971-104018096	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
38	nsv9170	chr14:103994260-104017971	Flanking Active TSS Strong transcription Genic enhancers Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

mRNA abundance (count:7)

SNP	Gene	Cis/trans	Tissue	Source
rs2296487	C14orf153	cis	cerebellum	SCAN
rs2296487	ZFYVE21	cis	cerebellum	SCAN
rs2296487	C14orf172	cis	multi-tissue	Pritchard
rs2296487	C14orf153	cis	parietal	SCAN
rs2296487	MARK3	cis	cerebellum	SCAN
rs2296487	TRMT61A	cis	lymphoblastoid	seeQTL
rs2296487	INF2	cis	cerebellum	SCAN

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:103994400-103996400	Active TSS	Fetal Kidney	kidney
2	chr14:103994400-103996600	Flanking Active TSS	Stomach Smooth Muscle	stomach
3	chr14:103994400-103996800	Active TSS	HUES64 Cell Line	embryonic stem cell
4	chr14:103994600-103996400	Flanking Active TSS	Primary B cells from cord blood	blood
5	chr14:103994600-103996400	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
6	chr14:103994600-103996600	Flanking Active TSS	Primary hematopoietic stem cells	blood
7	chr14:103994600-103996600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
8	chr14:103994600-103996600	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
9	chr14:103994600-103996600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr14:103994600-103996800	Active TSS	H9 Cell Line	embryonic stem cell
11	chr14:103994600-103996800	Active TSS	iPS-18 Cell Line	embryonic stem cell
12	chr14:103994600-103996800	Active TSS	iPS-20b Cell Line	embryonic stem cell
13	chr14:103994800-103996400	Active TSS	ES-I3 Cell Line	embryonic stem cell
14	chr14:103994800-103996400	Active TSS	HUES48 Cell Line	embryonic stem cell
15	chr14:103994800-103996400	Active TSS	Pancreatic Islets	Pancreatic Islet
16	chr14:103995000-103996400	Active TSS	A549	lung
17	chr14:103995000-103996600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr14:103995200-103996600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr14:103995200-103996800	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
20	chr14:103995600-103996400	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
21	chr14:103995600-103996400	Flanking Active TSS	Spleen	Spleen
22	chr14:103995600-103996600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
23	chr14:103995600-103996800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr14:103995600-103996800	Flanking Active TSS	Adipose Nuclei	Adipose
25	chr14:103995600-103996800	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
26	chr14:103995600-103997000	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
27	chr14:103995800-103996400	Flanking Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
28	chr14:103995800-103996400	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
29	chr14:103995800-103996400	Flanking Active TSS	Primary B cells from peripheral blood	blood
30	chr14:103995800-103996400	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
31	chr14:103995800-103996400	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
32	chr14:103995800-103996400	Flanking Active TSS	Brain Anterior Caudate	brain
33	chr14:103995800-103996400	Flanking Active TSS	Brain Germinal Matrix	brain
34	chr14:103995800-103996400	Flanking Active TSS	Fetal Brain Male	brain
35	chr14:103995800-103996400	Flanking Active TSS	Fetal Intestine Small	intestine
36	chr14:103995800-103996400	Flanking Active TSS	Placenta	Placenta
37	chr14:103995800-103996400	Flanking Active TSS	Fetal Stomach	stomach
38	chr14:103995800-103996400	Flanking Active TSS	Stomach Mucosa	stomach
39	chr14:103995800-103996400	Flanking Active TSS	Thymus	Thymus
40	chr14:103995800-103996400	Flanking Active TSS	Dnd41	blood
41	chr14:103995800-103996600	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr14:103995800-103996600	Flanking Active TSS	Primary T cells fromperipheralblood	blood
43	chr14:103995800-103996600	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
44	chr14:103995800-103996600	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
45	chr14:103995800-103996600	Flanking Active TSS	Liver	Liver
46	chr14:103995800-103996600	Flanking Active TSS	Brain Substantia Nigra	brain
47	chr14:103995800-103996600	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
48	chr14:103995800-103996600	Flanking Active TSS	Fetal Brain Female	brain
49	chr14:103995800-103996600	Flanking Active TSS	Fetal Muscle Trunk	muscle
50	chr14:103995800-103996600	Flanking Active TSS	Fetal Thymus	thymus

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