Variant report

Variant	rs2297022
Chromosome Location	chr9:108160771-108160772
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:108153124..108158591-chr9:108160157..108165830,7	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12378850	1.00[MEX][hapmap]
rs391232	1.00[MEX][hapmap]
rs7875335	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045108	chr9:107509553-108188550	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv1037750	chr9:108027692-108251733	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:108096200-108164200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr9:108125000-108166800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr9:108146800-108177600	Weak transcription	Left Ventricle	heart
4	chr9:108148400-108168000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr9:108148800-108165600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr9:108152600-108166000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr9:108153600-108163800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr9:108153600-108163800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr9:108155000-108164200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr9:108155400-108172600	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr9:108155600-108164200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr9:108155600-108165600	Weak transcription	Brain Anterior Caudate	brain
13	chr9:108155800-108163800	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr9:108156800-108165800	Weak transcription	Fetal Brain Male	brain
15	chr9:108157400-108161000	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr9:108157400-108161000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr9:108157400-108161400	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr9:108157400-108163200	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr9:108157600-108160800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr9:108157600-108160800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr9:108158600-108162000	Enhancers	Fetal Lung	lung
22	chr9:108159400-108163200	Weak transcription	Brain Cingulate Gyrus	brain
23	chr9:108159400-108164200	Weak transcription	Brain Hippocampus Middle	brain
24	chr9:108159600-108163800	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr9:108159800-108164000	Weak transcription	Psoas Muscle	Psoas
26	chr9:108159800-108164200	Weak transcription	Brain Substantia Nigra	brain
27	chr9:108159800-108166000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr9:108160000-108165800	Weak transcription	Brain Angular Gyrus	brain
29	chr9:108160400-108162000	Enhancers	ES-I3 Cell Line	embryonic stem cell
30	chr9:108160400-108162000	Enhancers	HUES64 Cell Line	embryonic stem cell
31	chr9:108160400-108164000	Weak transcription	Ovary	ovary
32	chr9:108160600-108161800	Enhancers	HUES48 Cell Line	embryonic stem cell
33	chr9:108160600-108161800	Enhancers	iPS-18 Cell Line	embryonic stem cell
34	chr9:108160600-108161800	Enhancers	Fetal Heart	heart

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