Variant report

Variant	rs2297023
Chromosome Location	chr9:108210711-108210712
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:7080074..7080803-chr9:108210357..108211069,2	Hela-S3	cervix:

Variant related genes	Relation type
ENSG00000126749	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10491809	0.81[ASN][1000 genomes]
rs10820804	0.89[ASN][1000 genomes]
rs10820814	0.82[ASN][1000 genomes]
rs10820815	0.81[ASN][1000 genomes]
rs10991659	0.87[ASN][1000 genomes]
rs10991673	0.81[ASN][1000 genomes]
rs10991677	0.82[ASN][1000 genomes]
rs11562356	0.82[ASN][1000 genomes]
rs12336844	0.80[ASN][1000 genomes]
rs12337780	0.82[ASN][1000 genomes]
rs12345599	0.80[ASN][1000 genomes]
rs12352975	0.82[ASN][1000 genomes]
rs2296750	0.82[ASN][1000 genomes]
rs28851907	0.80[ASN][1000 genomes]
rs3750500	0.81[ASN][1000 genomes]
rs3818598	1.00[ASN][1000 genomes]
rs55798036	0.82[ASN][1000 genomes]
rs7023302	0.83[ASN][1000 genomes]
rs7023520	0.82[ASN][1000 genomes]
rs7034149	0.84[ASN][1000 genomes]
rs7037104	0.82[ASN][1000 genomes]
rs7037141	0.97[ASN][1000 genomes]
rs7037218	0.82[ASN][1000 genomes]
rs7038407	0.82[ASN][1000 genomes]
rs7047791	0.84[ASN][1000 genomes]
rs72744263	0.82[ASN][1000 genomes]
rs72744264	0.82[ASN][1000 genomes]
rs7852541	0.92[ASN][1000 genomes]
rs7854411	0.84[ASN][1000 genomes]
rs7856617	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037750	chr9:108027692-108251733	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv1053973	chr9:108199177-108300186	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv615115	chr9:108205262-108298183	Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:108209600-108210800	Active TSS	Primary T cells from cord blood	blood
2	chr9:108209600-108211000	Active TSS	Brain Anterior Caudate	brain
3	chr9:108209600-108211000	Active TSS	Rectal Smooth Muscle	rectum
4	chr9:108209600-108211200	Active TSS	Brain Angular Gyrus	brain
5	chr9:108209600-108211400	Active TSS	ES-I3 Cell Line	embryonic stem cell
6	chr9:108209600-108211400	Active TSS	HUES6 Cell Line	embryonic stem cell
7	chr9:108209600-108211400	Active TSS	HUES64 Cell Line	embryonic stem cell
8	chr9:108209600-108211400	Active TSS	iPS-18 Cell Line	embryonic stem cell
9	chr9:108209600-108211400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr9:108209600-108211400	Active TSS	Breast Myoepithelial Primary Cells	Breast
11	chr9:108209600-108211400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
12	chr9:108209600-108211400	Active TSS	Pancreatic Islets	Pancreatic Islet
13	chr9:108209600-108211600	Active TSS	H1 Cell Line	embryonic stem cell
14	chr9:108209600-108211600	Active TSS	HUES48 Cell Line	embryonic stem cell
15	chr9:108209600-108211600	Active TSS	Fetal Brain Female	brain
16	chr9:108209600-108211600	Active TSS	Fetal Intestine Small	intestine
17	chr9:108209600-108211600	Active TSS	K562	blood
18	chr9:108209600-108211800	Active TSS	H9 Cell Line	embryonic stem cell
19	chr9:108209600-108211800	Active TSS	Fetal Kidney	kidney
20	chr9:108209600-108211800	Active TSS	NHDF-Ad	bronchial
21	chr9:108209600-108212000	Active TSS	iPS-20b Cell Line	embryonic stem cell
22	chr9:108209800-108210800	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr9:108209800-108210800	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr9:108209800-108210800	Active TSS	Primary T killer memory cells from peripheral blood	blood
25	chr9:108209800-108210800	Active TSS	Thymus	Thymus
26	chr9:108209800-108210800	Active TSS	Spleen	Spleen
27	chr9:108209800-108211000	Active TSS	iPS-15b Cell Line	embryonic stem cell
28	chr9:108209800-108211000	Active TSS	Primary T helper naive cells from peripheral blood	blood
29	chr9:108209800-108211000	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
30	chr9:108209800-108211000	Active TSS	Fetal Lung	lung
31	chr9:108209800-108211000	Active TSS	Small Intestine	intestine
32	chr9:108209800-108211200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
33	chr9:108209800-108211200	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr9:108209800-108211200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr9:108209800-108211200	Flanking Active TSS	Primary B cells from cord blood	blood
36	chr9:108209800-108211200	Flanking Active TSS	Primary hematopoietic stem cells	blood
37	chr9:108209800-108211200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr9:108209800-108211200	Active TSS	Aorta	Aorta
39	chr9:108209800-108211200	Active TSS	Lung	lung
40	chr9:108209800-108211200	Active TSS	Ovary	ovary
41	chr9:108209800-108211400	Active TSS	Colon Smooth Muscle	Colon
42	chr9:108209800-108211400	Active TSS	Duodenum Smooth Muscle	Duodenum
43	chr9:108209800-108212000	Active TSS	HSMMtube	muscle
44	chr9:108209800-108212200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr9:108209800-108212400	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr9:108209800-108212800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr9:108210000-108210800	Active TSS	Primary monocytes fromperipheralblood	blood
48	chr9:108210000-108211000	Active TSS	Brain Cingulate Gyrus	brain
49	chr9:108210000-108211000	Active TSS	Sigmoid Colon	Sigmoid Colon
50	chr9:108210000-108211000	Bivalent/Poised TSS	HepG2	liver

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