Variant report

Variant	rs229908
Chromosome Location	chr6:134317730-134317731
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:134317036..134319141-chr6:134322847..134324478,2	MCF-7	breast:
2	chr6:134317498..134321618-chr6:134323744..134327295,4	MCF-7	breast:
3	chr6:134315554..134318133-chr6:134326472..134328419,3	MCF-7	breast:
4	chr6:134317513..134320913-chr6:134321650..134324060,3	K562	blood:
5	chr6:134316341..134318411-chr6:134319524..134321616,3	K562	blood:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs229904	1.00[JPT][hapmap]
rs229906	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34122	chr6:134089019-134378252	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:134297000-134318000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr6:134302800-134324000	Weak transcription	Fetal Muscle Leg	muscle
3	chr6:134304800-134324000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:134304800-134331000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr6:134305000-134328400	Weak transcription	Fetal Stomach	stomach
6	chr6:134306000-134324000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr6:134306000-134324000	Weak transcription	Brain Anterior Caudate	brain
8	chr6:134306200-134328000	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr6:134307800-134320400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr6:134308000-134318400	Weak transcription	Primary T cells from cord blood	blood
11	chr6:134308400-134320400	Weak transcription	Placenta	Placenta
12	chr6:134308800-134319600	Weak transcription	Liver	Liver
13	chr6:134309400-134327600	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr6:134312200-134322000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr6:134312400-134321000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr6:134312400-134323200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr6:134312400-134349600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr6:134312600-134323200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr6:134312800-134318400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr6:134313800-134336400	Weak transcription	Psoas Muscle	Psoas
21	chr6:134314200-134318200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr6:134314200-134320600	Weak transcription	Left Ventricle	heart
23	chr6:134314200-134324000	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr6:134314200-134324200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr6:134314200-134328000	Weak transcription	Lung	lung
26	chr6:134314400-134341800	Weak transcription	Stomach Smooth Muscle	stomach
27	chr6:134314800-134323600	Weak transcription	Brain Substantia Nigra	brain
28	chr6:134315000-134323600	Weak transcription	Brain Hippocampus Middle	brain
29	chr6:134315200-134320600	Weak transcription	Aorta	Aorta
30	chr6:134315200-134323200	Weak transcription	Brain Angular Gyrus	brain
31	chr6:134315200-134323800	Weak transcription	Brain Cingulate Gyrus	brain
32	chr6:134315200-134324000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr6:134315200-134328400	Weak transcription	Fetal Lung	lung
34	chr6:134315200-134341200	Weak transcription	Fetal Heart	heart
35	chr6:134315200-134342200	Weak transcription	Right Ventricle	heart
36	chr6:134315400-134355800	Weak transcription	Right Atrium	heart
37	chr6:134316000-134318000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr6:134316000-134318000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr6:134316000-134318600	Enhancers	iPS-15b Cell Line	embryonic stem cell
40	chr6:134316200-134318000	Enhancers	iPS-20b Cell Line	embryonic stem cell
41	chr6:134316200-134318000	Enhancers	Osteobl	bone
42	chr6:134316400-134318000	Enhancers	HUES48 Cell Line	embryonic stem cell
43	chr6:134316400-134318000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr6:134316400-134318000	Enhancers	NHDF-Ad	bronchial
45	chr6:134316400-134318000	Enhancers	NHLF	lung
46	chr6:134316600-134318000	Enhancers	ES-I3 Cell Line	embryonic stem cell
47	chr6:134316600-134318200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr6:134316600-134319600	Enhancers	Muscle Satellite Cultured Cells	--
49	chr6:134317000-134318000	Enhancers	iPS-18 Cell Line	embryonic stem cell
50	chr6:134317000-134318400	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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