Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs330794	0.95[ASN][1000 genomes]
rs330795	0.96[ASN][1000 genomes]
rs330796	0.96[ASN][1000 genomes]
rs6545003	0.96[ASN][1000 genomes]
rs7594412	0.81[ASN][1000 genomes]
rs797683	0.96[ASN][1000 genomes]
rs797685	0.95[ASN][1000 genomes]
rs797686	0.95[ASN][1000 genomes]
rs797687	0.95[ASN][1000 genomes]
rs797688	0.95[ASN][1000 genomes]
rs797689	0.95[ASN][1000 genomes]
rs797690	0.93[ASN][1000 genomes]
rs797691	0.91[ASN][1000 genomes]
rs797692	0.82[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs797694	0.92[ASN][1000 genomes]
rs797695	0.92[ASN][1000 genomes]
rs797696	0.92[ASN][1000 genomes]
rs797697	0.88[ASN][1000 genomes]
rs797698	0.82[ASN][1000 genomes]
rs797699	0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs797700	0.91[ASN][1000 genomes]
rs797701	0.91[ASN][1000 genomes]
rs797702	0.91[ASN][1000 genomes]
rs797703	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs810016	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817599	chr2:47738456-47961099	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv873999	chr2:47916074-48019485	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv998096	chr2:47939614-48131697	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:47957600-47968200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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