Variant report

Variant	rs2299724
Chromosome Location	chr20:52610005-52610006
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs2276495	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2276505	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs2299732	0.82[ASN][1000 genomes]
rs2302040	0.82[ASN][1000 genomes]
rs6123334	0.83[ASN][1000 genomes]
rs73622290	0.82[ASN][1000 genomes]
rs73622291	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34060	chr20:52251863-52702186	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	296 gene(s)	inside rSNPs	diseases
2	nsv586224	chr20:52474850-53279490	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	338 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:52566400-52644800	Weak transcription	Gastric	stomach
2	chr20:52581200-52610600	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr20:52601400-52612400	Weak transcription	Brain Angular Gyrus	brain
4	chr20:52601400-52612400	Weak transcription	Brain Anterior Caudate	brain
5	chr20:52601800-52612400	Weak transcription	Brain Cingulate Gyrus	brain
6	chr20:52601800-52630800	Weak transcription	Stomach Mucosa	stomach
7	chr20:52604400-52618200	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr20:52606800-52610600	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr20:52609400-52610400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
10	chr20:52609600-52610200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
11	chr20:52609800-52610800	Transcr. at gene 5' and 3'	HSMMtube	muscle
12	chr20:52610000-52610400	Weak transcription	Brain Substantia Nigra	brain
13	chr20:52610000-52612600	Strong transcription	Rectal Mucosa Donor 31	rectum

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links