Variant report

Variant rs2299841
Chromosome Location chr18:9828448-9828449
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:78 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr18:9807800-9832000 Weak transcription Primary mononuclear cells fromperipheralblood Blood
2 chr18:9812400-9834600 Weak transcription HUES6 Cell Line embryonic stem cell
3 chr18:9812400-9834800 Weak transcription ES-I3 Cell Line embryonic stem cell
4 chr18:9823000-9830600 Enhancers Primary monocytes fromperipheralblood blood
5 chr18:9823800-9829200 Enhancers Placenta Placenta
6 chr18:9823800-9829400 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
7 chr18:9823800-9829600 Enhancers Breast Myoepithelial Primary Cells Breast
8 chr18:9824400-9829000 Enhancers Fetal Intestine Small intestine
9 chr18:9824400-9829200 Enhancers Foreskin Fibroblast Primary Cells skin02 Skin
10 chr18:9824600-9829600 Flanking Active TSS Monocytes-CD14+_RO01746 blood
11 chr18:9825200-9830400 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
12 chr18:9825400-9829800 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
13 chr18:9825400-9832200 Weak transcription Fetal Stomach stomach
14 chr18:9825400-9849800 Weak transcription Gastric stomach
15 chr18:9825800-9831000 Weak transcription Brain Hippocampus Middle brain
16 chr18:9825800-9831200 Weak transcription Brain Inferior Temporal Lobe brain
17 chr18:9825800-9831200 Weak transcription Right Ventricle heart
18 chr18:9825800-9831400 Weak transcription Cortex derived primary cultured neurospheres brain
19 chr18:9825800-9835400 Weak transcription Brain Angular Gyrus brain
20 chr18:9826000-9828600 Enhancers Rectal Mucosa Donor 31 rectum
21 chr18:9826000-9828800 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
22 chr18:9826000-9828800 Enhancers Stomach Smooth Muscle stomach
23 chr18:9826000-9829200 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
24 chr18:9826000-9831000 Weak transcription Brain Cingulate Gyrus brain
25 chr18:9826000-9835200 Weak transcription Brain Anterior Caudate brain
26 chr18:9826200-9830800 Weak transcription Brain Substantia Nigra brain
27 chr18:9826200-9831000 Weak transcription Aorta Aorta
28 chr18:9826200-9831800 Weak transcription Skeletal Muscle Male skeletal muscle
29 chr18:9826400-9830200 Weak transcription Fetal Intestine Large intestine
30 chr18:9826600-9828600 Genic enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
31 chr18:9826600-9829400 Enhancers NHLF lung
32 chr18:9826800-9828600 Enhancers Fetal Muscle Leg muscle
33 chr18:9826800-9829400 Enhancers NH-A brain
34 chr18:9826800-9829600 Flanking Active TSS Primary neutrophils fromperipheralblood blood
35 chr18:9827000-9829000 Enhancers Duodenum Mucosa Duodenum
36 chr18:9827200-9828600 Enhancers Primary B cells from cord blood blood
37 chr18:9827200-9829600 Enhancers NHDF-Ad bronchial
38 chr18:9827400-9829000 Enhancers H1 Derived Mesenchymal Stem Cells ES cell derived
39 chr18:9827400-9829000 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
40 chr18:9827400-9829000 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
41 chr18:9827400-9829000 Enhancers Muscle Satellite Cultured Cells --
42 chr18:9827400-9829000 Flanking Active TSS A549 lung
43 chr18:9827600-9828600 Flanking Active TSS Primary hematopoietic stem cells short term culture blood
44 chr18:9827600-9828600 Enhancers Fetal Lung lung
45 chr18:9827600-9830800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
46 chr18:9827800-9829000 Enhancers HSMM muscle
47 chr18:9827800-9829400 Flanking Active TSS NHEK skin
48 chr18:9827800-9837800 Weak transcription Primary B cells from peripheral blood blood
49 chr18:9828000-9828600 Enhancers HSMMtube muscle
50 chr18:9828000-9829000 Enhancers Esophagus oesophagus

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