Variant report

Variant	rs2300869
Chromosome Location	chr14:66142960-66142961
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:66136933..66139072-chr14:66142582..66145379,2	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10483783	0.87[ASN][1000 genomes]
rs2300873	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs7155169	0.96[ASN][1000 genomes]
rs73286174	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036403	chr14:65724229-66208114	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv1043943	chr14:65782466-66698411	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
3	nsv542120	chr14:65782466-66698411	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	55 gene(s)	inside rSNPs	diseases
4	nsv1039168	chr14:65811750-66308343	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
5	esv3366524	chr14:65924360-66423862	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
6	nsv1045000	chr14:66010886-66372518	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv1042671	chr14:66010886-66399888	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	nsv902026	chr14:66061020-66171541	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:66090800-66145000	Weak transcription	Small Intestine	intestine
2	chr14:66099200-66144000	Weak transcription	Duodenum Mucosa	Duodenum
3	chr14:66100600-66160000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr14:66105000-66143400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr14:66105000-66149600	Weak transcription	Fetal Thymus	thymus
6	chr14:66105000-66157400	Weak transcription	Primary hematopoietic stem cells	blood
7	chr14:66125600-66146600	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr14:66125600-66157400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr14:66126400-66146800	Weak transcription	Brain Cingulate Gyrus	brain
10	chr14:66126800-66153400	Weak transcription	Aorta	Aorta
11	chr14:66129400-66143200	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr14:66130400-66146600	Weak transcription	Brain Angular Gyrus	brain
13	chr14:66131000-66143400	Weak transcription	Rectal Smooth Muscle	rectum
14	chr14:66134200-66153200	Weak transcription	Ovary	ovary
15	chr14:66136000-66143400	Weak transcription	NHDF-Ad	bronchial
16	chr14:66136200-66155400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr14:66136400-66148600	Weak transcription	Primary T cells fromperipheralblood	blood
18	chr14:66137000-66143400	Weak transcription	Stomach Mucosa	stomach
19	chr14:66137000-66189000	Weak transcription	Primary T helper cells fromperipheralblood	blood
20	chr14:66137600-66146600	Weak transcription	Fetal Intestine Small	intestine
21	chr14:66138000-66177400	Weak transcription	Primary T helper cells PMA-I stimulated	--
22	chr14:66139000-66143800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr14:66139200-66146800	Weak transcription	Brain Hippocampus Middle	brain
24	chr14:66139200-66153800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr14:66139200-66155400	Weak transcription	Primary T cells from cord blood	blood
26	chr14:66140200-66150000	Weak transcription	GM12878-XiMat	blood
27	chr14:66140400-66143400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr14:66140400-66143800	Weak transcription	Dnd41	blood
29	chr14:66140600-66147000	Weak transcription	Primary B cells from cord blood	blood
30	chr14:66141600-66156600	Weak transcription	Fetal Intestine Large	intestine
31	chr14:66142000-66143000	Weak transcription	HepG2	liver
32	chr14:66142000-66148600	Weak transcription	Primary B cells from peripheral blood	blood

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