Variant report

Variant	rs2302454
Chromosome Location	chr7:117828210-117828211
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:89768960..89770778-chr7:117827022..117828704,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000176055	Chromatin interaction
ENSG00000113356	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs61345178	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869971	chr7:117420583-118274149	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	nsv889088	chr7:117744660-117913648	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117824800-117829000	Weak transcription	Lung	lung
2	chr7:117824800-117829200	Weak transcription	Gastric	stomach
3	chr7:117824800-117832600	Weak transcription	Pancreas	Pancrea
4	chr7:117825000-117830600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr7:117825000-117834000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr7:117825000-117842200	Weak transcription	Aorta	Aorta
7	chr7:117825200-117828400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
8	chr7:117825200-117830600	Weak transcription	HSMMtube	muscle
9	chr7:117825200-117834000	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr7:117825600-117828400	Weak transcription	Colonic Mucosa	Colon
11	chr7:117825600-117829000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr7:117825600-117829000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr7:117825600-117829000	Weak transcription	Esophagus	oesophagus
14	chr7:117825600-117832000	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr7:117825600-117834000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr7:117825600-117835000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr7:117825600-117835600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr7:117825600-117837200	Weak transcription	Left Ventricle	heart
19	chr7:117825800-117829000	Weak transcription	Fetal Intestine Small	intestine
20	chr7:117825800-117829000	Weak transcription	Spleen	Spleen
21	chr7:117825800-117831000	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr7:117825800-117831200	Weak transcription	Brain Anterior Caudate	brain
23	chr7:117825800-117834000	Weak transcription	Brain Cingulate Gyrus	brain
24	chr7:117825800-117834600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr7:117825800-117836600	Weak transcription	Psoas Muscle	Psoas
26	chr7:117825800-117842600	Weak transcription	Brain Hippocampus Middle	brain
27	chr7:117826000-117828600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr7:117826000-117828800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
29	chr7:117826000-117829000	Weak transcription	Ovary	ovary
30	chr7:117826000-117829200	Weak transcription	Small Intestine	intestine
31	chr7:117826000-117831000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr7:117826000-117832000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
33	chr7:117826000-117833200	Strong transcription	HUES64 Cell Line	embryonic stem cell
34	chr7:117826000-117833600	Weak transcription	HepG2	liver
35	chr7:117826000-117834000	Weak transcription	Brain Inferior Temporal Lobe	brain
36	chr7:117826000-117834200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
37	chr7:117826000-117834200	Weak transcription	Fetal Brain Male	brain
38	chr7:117826000-117835200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
39	chr7:117826400-117831000	Weak transcription	Brain Angular Gyrus	brain
40	chr7:117826400-117833200	Strong transcription	HUES48 Cell Line	embryonic stem cell
41	chr7:117826600-117829200	Weak transcription	Brain Germinal Matrix	brain
42	chr7:117826600-117829600	Strong transcription	A549	lung
43	chr7:117826600-117834000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr7:117826800-117829000	Weak transcription	Thymus	Thymus
45	chr7:117826800-117832400	Weak transcription	Colon Smooth Muscle	Colon
46	chr7:117826800-117833400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
47	chr7:117827000-117828600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
48	chr7:117827000-117828800	Strong transcription	K562	blood
49	chr7:117827000-117829200	Strong transcription	HSMM	muscle
50	chr7:117827000-117829400	Strong transcription	Rectal Mucosa Donor 29	rectum

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