Variant report

Variant	rs2302846
Chromosome Location	chr12:31226930-31226931
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	JUND	chr12:31226205-31227802	A549	lung:	n/a	chr12:31227387-31227394
2	YY1	chr12:31226797-31227489	GM12878	blood:	n/a	n/a
3	POLR2A	chr12:31226080-31227526	Hela-S3	cervix:	n/a	n/a
4	POLR2A	chr12:31226483-31227394	HCT-116	colon:	n/a	n/a
5	POLR2A	chr12:31226521-31227323	GM10847	blood:	n/a	n/a
6	POLR2A	chr12:31226018-31228146	H1-hESC	embryonic stem cell:	n/a	n/a
7	POLR2A	chr12:31226572-31227384	K562	blood:	n/a	n/a
8	E2F6	chr12:31226305-31227692	K562	blood:	n/a	chr12:31227044-31227051 chr12:31227044-31227051 chr12:31226861-31226871 chr12:31227406-31227418 chr12:31227044-31227051 chr12:31226705-31226716 chr12:31227040-31227052
9	POLR2A	chr12:31226526-31227690	HepG2	liver:	n/a	n/a
10	POLR2A	chr12:31226455-31227517	GM12892	blood:	n/a	n/a
11	REST	chr12:31226578-31227484	A549	lung:	n/a	n/a
12	MAX	chr12:31226927-31227555	K562	blood:	n/a	n/a
13	SPI1	chr12:31226898-31227198	K562	blood:	n/a	chr12:31226953-31226966
14	CEBPD	chr12:31226472-31226934	K562	blood:	n/a	n/a
15	MYC	chr12:31226530-31227544	K562	blood:	n/a	n/a
16	STAT3	chr12:31226739-31227322	MCF10A-Er-Src	breast:	n/a	chr12:31227286-31227306
17	POLR2A	chr12:31226248-31227470	Gliobla	brain:	n/a	n/a
18	POLR2A	chr12:31226454-31227449	K562	blood:	n/a	n/a
19	TCF12	chr12:31226317-31227996	GM12878	blood:	n/a	chr12:31227445-31227453 chr12:31227708-31227715
20	NFIC	chr12:31226585-31227836	GM12878	blood:	n/a	n/a
21	STAT3	chr12:31226834-31227122	MCF10A-Er-Src	breast:	n/a	n/a
22	SP1	chr12:31226148-31227350	GM12878	blood:	n/a	n/a
23	TBP	chr12:31226509-31227495	Hela-S3	cervix:	n/a	n/a
24	POLR2A	chr12:31226034-31228075	H1-hESC	embryonic stem cell:	n/a	n/a
25	POLR2A	chr12:31226520-31227395	K562	blood:	n/a	n/a
26	MYC	chr12:31226905-31227404	MCF-7	breast:	n/a	n/a
27	MYBL2	chr12:31226285-31227630	HepG2	liver:	n/a	n/a
28	MAX	chr12:31226530-31227527	NB4	blood:	n/a	n/a
29	TEAD4	chr12:31226720-31227336	HepG2	liver:	n/a	n/a
30	POLR2A	chr12:31226539-31227336	HepG2	liver:	n/a	n/a
31	POLR2A	chr12:31226228-31227420	MCF-7	breast:	n/a	n/a
32	POLR2A	chr12:31226528-31227379	HEK293	kidney:	n/a	n/a
33	PML	chr12:31226924-31227325	GM12878	blood:	n/a	n/a
34	TAF1	chr12:31226688-31227160	GM12878	blood:	n/a	n/a
35	EBF1	chr12:31226458-31227836	GM12878	blood:	n/a	n/a
36	SIN3AK20	chr12:31226493-31227824	SK-N-SH	brain:	n/a	n/a
37	POLR2A	chr12:31225974-31227431	MCF-7	breast:	n/a	n/a
38	MAX	chr12:31226533-31227642	A549	lung:	n/a	n/a
39	POU2F2	chr12:31226679-31227030	GM12878	blood:	n/a	chr12:31226782-31226794
40	TAF1	chr12:31226751-31227254	GM12891	blood:	n/a	n/a
41	RCOR1	chr12:31226540-31227664	K562	blood:	n/a	n/a
42	SETDB1	chr12:31226549-31227321	U2OS	brain:	n/a	chr12:31227048-31227072
43	TAF1	chr12:31226486-31227759	GM12878	blood:	n/a	n/a
44	MAZ	chr12:31226532-31227644	K562	blood:	n/a	n/a
45	TCF12	chr12:31226285-31227732	A549	lung:	n/a	chr12:31227445-31227453 chr12:31227708-31227715
46	ELF1	chr12:31226604-31227777	K562	blood:	n/a	chr12:31227054-31227065 chr12:31227054-31227065 chr12:31226782-31226794
47	TBP	chr12:31226535-31227641	K562	blood:	n/a	n/a
48	CHD1	chr12:31226926-31227309	GM12878	blood:	n/a	n/a
49	ELK4	chr12:31226543-31227374	Hela-S3	cervix:	n/a	n/a
50	POLR2A	chr12:31226348-31227772	ECC-1	luminal epithelium:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr12:9436173..9436735-chr12:31226434..31227168,3	Hela-S3	cervix:
2	chr12:9435913..9436700-chr12:31226425..31227148,3	HCT-116	colon:
3	chr12:31226738..31227630-chr20:47894738..47895520,2	Hela-S3	cervix:

Variant related genes	Relation type
DDX11	TF binding region
DDX11-AS1	TF binding region
ENSG00000111788	Chromatin interaction
ENSG00000124201	Chromatin interaction
ENSG00000209042	Chromatin interaction
ENSG00000177410	Chromatin interaction

Extended variants
information (count: 88 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12579271	0.90[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12581623	1.00[AFR][1000 genomes]
rs1861921	1.00[AFR][1000 genomes]
rs2075363	1.00[AFR][1000 genomes]
rs2075364	1.00[AFR][1000 genomes]
rs2241322	1.00[AFR][1000 genomes]
rs2352618	1.00[AFR][1000 genomes]
rs4244855	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes]
rs4418893	1.00[AFR][1000 genomes]
rs4930948	1.00[AFR][1000 genomes]
rs4931415	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs4931416	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs4931419	1.00[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs56653968	1.00[AFR][1000 genomes]
rs57385044	1.00[AFR][1000 genomes]
rs58201849	1.00[AFR][1000 genomes]
rs59216191	1.00[AFR][1000 genomes]
rs59369734	1.00[AFR][1000 genomes]
rs60101142	1.00[AFR][1000 genomes]
rs741504	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:68 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052869	chr12:30951520-31399162	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	esv2422447	chr12:30954811-31449815	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv558030	chr12:30969675-31266287	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv1041877	chr12:31009451-31809254	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
5	nsv541440	chr12:31009451-31809254	ZNF genes & repeats Enhancers Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
6	esv2422366	chr12:31071959-31276836	Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Strong transcription Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
7	nsv541441	chr12:31080091-31399162	Strong transcription Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
8	nsv1038745	chr12:31087757-31305190	Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
9	nsv427906	chr12:31095869-31361902	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
10	esv2422323	chr12:31103190-31275170	Bivalent/Poised TSS ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
11	esv2422496	chr12:31103190-31275170	Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
12	esv2422264	chr12:31103190-31345995	Weak transcription Strong transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
13	esv2758303	chr12:31125467-31491104	Active TSS Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
14	esv2759890	chr12:31125467-31491104	Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
15	nsv428276	chr12:31125467-31491104	Strong transcription Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
16	esv2422254	chr12:31128132-31326508	Enhancers Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
17	nsv430467	chr12:31148662-31410284	Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
18	esv2751043	chr12:31148662-31499671	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
19	esv2751044	chr12:31171028-31406907	Bivalent Enhancer Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
20	esv2751045	chr12:31171028-31410333	Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
21	esv2751046	chr12:31174233-31684733	Bivalent Enhancer Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
22	nsv430469	chr12:31174278-31410284	Bivalent Enhancer Enhancers ZNF genes & repeats Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
23	nsv541442	chr12:31186657-31391898	Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Strong transcription Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
24	nsv541443	chr12:31186657-31399162	Bivalent/Poised TSS Genic enhancers Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
25	nsv541444	chr12:31191137-31399162	Strong transcription Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
26	esv2751047	chr12:31195272-31410284	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
27	nsv469195	chr12:31201717-31406907	Strong transcription Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
28	nsv558032	chr12:31201717-31406907	Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
29	nsv515974	chr12:31201717-31452750	Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
30	nsv430470	chr12:31201922-31410833	Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
31	esv2751048	chr12:31201922-31414473	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
32	nsv659	chr12:31203746-31249055	Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
33	esv3494304	chr12:31206205-31263015	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
34	esv3494305	chr12:31206205-31263015	Strong transcription Genic enhancers Weak transcription Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
35	nsv870239	chr12:31207051-31339312	Strong transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
36	esv1832795	chr12:31209204-31261698	Enhancers Genic enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
37	nsv469196	chr12:31210114-31406907	Flanking Active TSS Bivalent/Poised TSS Weak transcription Enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
38	nsv469197	chr12:31210114-31406907	Bivalent/Poised TSS Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
39	nsv469198	chr12:31210114-31406907	Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Weak transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
40	nsv469199	chr12:31210114-31406907	Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
41	nsv469200	chr12:31210114-31406907	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
42	nsv558033	chr12:31210114-31406907	Strong transcription Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
43	nsv818899	chr12:31210114-31406907	Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
44	nsv558034	chr12:31210114-31408511	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
45	nsv558035	chr12:31210114-31410821	Strong transcription Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
46	nsv832363	chr12:31210478-31380034	Strong transcription Active TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
47	nsv430471	chr12:31213735-31414473	Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
48	nsv1045497	chr12:31213735-31458547	ZNF genes & repeats Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
49	nsv558036	chr12:31214179-31406907	Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
50	nsv1049249	chr12:31218687-31402690	Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:31225200-31228000	Active TSS	ES-I3 Cell Line	embryonic stem cell
2	chr12:31225200-31228400	Active TSS	HUES6 Cell Line	embryonic stem cell
3	chr12:31225200-31228600	Active TSS	iPS-20b Cell Line	embryonic stem cell
4	chr12:31225400-31227200	Active TSS	Primary hematopoietic stem cells short term culture	blood
5	chr12:31225400-31227400	Active TSS	Thymus	Thymus
6	chr12:31225400-31227800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
7	chr12:31225400-31228000	Active TSS	HUES48 Cell Line	embryonic stem cell
8	chr12:31225400-31228000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr12:31225400-31228200	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr12:31225400-31228200	Active TSS	HUES64 Cell Line	embryonic stem cell
11	chr12:31225600-31227000	Active TSS	Skeletal Muscle Female	skeletal muscle
12	chr12:31225600-31227400	Active TSS	Primary T cells from cord blood	blood
13	chr12:31225600-31228000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr12:31225600-31228000	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr12:31225600-31228400	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr12:31225600-31229000	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr12:31225800-31227400	Active TSS	Breast Myoepithelial Primary Cells	Breast
18	chr12:31225800-31227400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
19	chr12:31225800-31227600	Active TSS	NHEK	skin
20	chr12:31225800-31227800	Active TSS	Rectal Smooth Muscle	rectum
21	chr12:31225800-31228000	Active TSS	H1 Cell Line	embryonic stem cell
22	chr12:31225800-31228000	Active TSS	H9 Cell Line	embryonic stem cell
23	chr12:31225800-31228000	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr12:31225800-31228000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr12:31225800-31228000	Active TSS	Fetal Brain Female	brain
26	chr12:31225800-31228000	Active TSS	Fetal Kidney	kidney
27	chr12:31225800-31228600	Active TSS	A549	lung
28	chr12:31225800-31229200	Active TSS	GM12878-XiMat	blood
29	chr12:31226000-31227000	Active TSS	Liver	Liver
30	chr12:31226000-31227000	Active TSS	Stomach Smooth Muscle	stomach
31	chr12:31226000-31227200	Active TSS	Primary T regulatory cells fromperipheralblood	blood
32	chr12:31226000-31227200	Active TSS	Primary T killer memory cells from peripheral blood	blood
33	chr12:31226000-31227200	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr12:31226000-31227200	Active TSS	Brain Anterior Caudate	brain
35	chr12:31226000-31227200	Active TSS	HepG2	liver
36	chr12:31226000-31227200	Active TSS	HUVEC	blood vessel
37	chr12:31226000-31227400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr12:31226000-31227400	Active TSS	Brain Hippocampus Middle	brain
39	chr12:31226000-31227400	Active TSS	Brain Inferior Temporal Lobe	brain
40	chr12:31226000-31227400	Active TSS	Duodenum Mucosa	Duodenum
41	chr12:31226000-31227400	Active TSS	Fetal Heart	heart
42	chr12:31226000-31227400	Active TSS	Fetal Stomach	stomach
43	chr12:31226000-31227600	Active TSS	Right Ventricle	heart
44	chr12:31226000-31227800	Active TSS	Fetal Intestine Large	intestine
45	chr12:31226000-31227800	Active TSS	Pancreatic Islets	Pancreatic Islet
46	chr12:31226000-31227800	Active TSS	Gastric	stomach
47	chr12:31226000-31227800	Active TSS	HSMMtube	muscle
48	chr12:31226000-31227800	Active TSS	NH-A	brain
49	chr12:31226000-31228000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr12:31226000-31228000	Active TSS	iPS-15b Cell Line	embryonic stem cell

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