Variant report

Variant	rs2303868
Chromosome Location	chr15:34135826-34135827
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:34131010..34134235-chr15:34134372..34138936,4	K562	blood:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10519884	1.00[CEU][hapmap];0.93[TSI][hapmap];0.86[EUR][1000 genomes]
rs12439280	0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.96[ASN][1000 genomes]
rs17236651	0.90[CEU][hapmap]
rs2241648	1.00[CHB][hapmap];0.85[CHD][hapmap];0.84[GIH][hapmap]
rs2278072	0.80[CHB][hapmap];0.90[JPT][hapmap]
rs2278314	0.81[CEU][hapmap];0.80[CHB][hapmap];0.92[GIH][hapmap];0.90[JPT][hapmap];0.93[TSI][hapmap];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2303309	0.84[CHB][hapmap]
rs2303869	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2303870	0.93[CHB][hapmap];0.81[JPT][hapmap];0.86[ASN][1000 genomes]
rs4780185	0.81[ASN][1000 genomes]
rs7169684	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7174516	0.80[ASN][1000 genomes]
rs724443	0.81[CEU][hapmap]
rs891343	0.80[CHB][hapmap];0.85[JPT][hapmap]
rs891344	0.85[CHB][hapmap];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043046	chr15:33714908-34321330	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv456789	chr15:34034421-34426618	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv568920	chr15:34034421-34426618	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv471235	chr15:34035529-34421951	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	nsv568921	chr15:34046635-34247622	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
6	nsv1044844	chr15:34065524-34296829	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:34090600-34151800	Weak transcription	Brain Cingulate Gyrus	brain
2	chr15:34091800-34151000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr15:34114400-34149400	Weak transcription	Fetal Stomach	stomach
4	chr15:34119600-34137200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr15:34121400-34158400	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr15:34124400-34146800	Weak transcription	Brain Substantia Nigra	brain
7	chr15:34124400-34148600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr15:34124400-34151200	Weak transcription	Brain Hippocampus Middle	brain
9	chr15:34127800-34147800	Weak transcription	Colon Smooth Muscle	Colon
10	chr15:34128200-34144200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr15:34129800-34151600	Weak transcription	Fetal Brain Female	brain
12	chr15:34130000-34151000	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr15:34130800-34151200	Weak transcription	Aorta	Aorta
14	chr15:34130800-34158600	Weak transcription	Brain Germinal Matrix	brain
15	chr15:34131200-34146800	Weak transcription	Brain Anterior Caudate	brain
16	chr15:34132200-34146400	Weak transcription	Fetal Muscle Trunk	muscle
17	chr15:34132400-34136600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr15:34133000-34138200	Weak transcription	HSMMtube	muscle
19	chr15:34134200-34138800	Strong transcription	Stomach Smooth Muscle	stomach
20	chr15:34134400-34137200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr15:34134600-34141400	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr15:34135000-34141400	Weak transcription	Fetal Muscle Leg	muscle
23	chr15:34135200-34138200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr15:34135600-34136200	Enhancers	HUES48 Cell Line	embryonic stem cell
25	chr15:34135600-34136200	Enhancers	iPS-18 Cell Line	embryonic stem cell
26	chr15:34135600-34136200	Enhancers	iPS-20b Cell Line	embryonic stem cell
27	chr15:34135600-34136400	Enhancers	H9 Cell Line	embryonic stem cell
28	chr15:34135600-34137400	Enhancers	iPS-15b Cell Line	embryonic stem cell
29	chr15:34135600-34137600	Enhancers	HUES6 Cell Line	embryonic stem cell
30	chr15:34135800-34137400	Enhancers	ES-I3 Cell Line	embryonic stem cell
31	chr15:34135800-34137400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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