Variant report

Variant	rs2304558
Chromosome Location	chr2:153468187-153468188
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:153364136..153366729-chr2:153467251..153469526,2	MCF-7	breast:
2	chr2:153463501..153465128-chr2:153466581..153468882,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10208744	0.86[EUR][1000 genomes]
rs17400736	0.87[CEU][hapmap];0.84[EUR][1000 genomes]
rs6738344	0.87[TSI][hapmap];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3693436	chr2:153219836-153479857	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1013777	chr2:153273637-153538546	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv834420	chr2:153339646-153535460	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:153400000-153468200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr2:153423800-153471200	Weak transcription	Fetal Kidney	kidney
3	chr2:153428000-153468200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr2:153434200-153473600	Weak transcription	Brain Germinal Matrix	brain
5	chr2:153435400-153473200	Weak transcription	Right Ventricle	heart
6	chr2:153438400-153475400	Weak transcription	Pancreas	Pancrea
7	chr2:153442800-153471600	Weak transcription	Fetal Muscle Trunk	muscle
8	chr2:153443000-153476400	Weak transcription	Rectal Smooth Muscle	rectum
9	chr2:153444600-153468200	Weak transcription	HUVEC	blood vessel
10	chr2:153444600-153468200	Weak transcription	NH-A	brain
11	chr2:153448600-153468200	Weak transcription	Lung	lung
12	chr2:153451200-153476200	Weak transcription	Gastric	stomach
13	chr2:153451400-153473600	Weak transcription	Aorta	Aorta
14	chr2:153452200-153468200	Weak transcription	Small Intestine	intestine
15	chr2:153454800-153468200	Weak transcription	Right Atrium	heart
16	chr2:153454800-153471800	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr2:153454800-153473600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr2:153454800-153473600	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr2:153454800-153496600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr2:153456200-153469600	Weak transcription	A549	lung
21	chr2:153456400-153469800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr2:153457200-153473200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr2:153457200-153505000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr2:153457400-153468400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
25	chr2:153457800-153468200	Weak transcription	Hela-S3	cervix
26	chr2:153459600-153468200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr2:153459800-153468200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr2:153459800-153468200	Weak transcription	Fetal Muscle Leg	muscle
29	chr2:153459800-153468800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr2:153459800-153468800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr2:153460000-153471400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr2:153461000-153468200	Weak transcription	HSMMtube	muscle
33	chr2:153461000-153468600	Weak transcription	HSMM	muscle
34	chr2:153462200-153474800	Weak transcription	Fetal Intestine Small	intestine
35	chr2:153462400-153468200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr2:153463600-153468200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr2:153463600-153479600	Strong transcription	Placenta	Placenta
38	chr2:153463800-153502800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr2:153464000-153469800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr2:153464000-153479200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
41	chr2:153464000-153502800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr2:153464600-153480000	Strong transcription	NHEK	skin
43	chr2:153464800-153468600	Weak transcription	Psoas Muscle	Psoas
44	chr2:153465000-153468200	Weak transcription	Fetal Stomach	stomach
45	chr2:153465600-153468200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
46	chr2:153465600-153468800	Weak transcription	Left Ventricle	heart
47	chr2:153465600-153474000	Weak transcription	Fetal Brain Male	brain
48	chr2:153465800-153468200	Weak transcription	HUES6 Cell Line	embryonic stem cell
49	chr2:153465800-153468800	Weak transcription	HUES64 Cell Line	embryonic stem cell
50	chr2:153466000-153469400	Weak transcription	Brain Angular Gyrus	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links