Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:55143524..55144176-chr5:20128670..20129566,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10196667	1.00[JPT][hapmap]
rs10746530	1.00[JPT][hapmap]
rs11125551	1.00[JPT][hapmap]
rs11904457	0.89[AMR][1000 genomes]
rs13020490	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13026576	0.84[AMR][1000 genomes]
rs13028800	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17417648	0.90[JPT][hapmap]
rs17418111	0.95[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2116491	0.81[JPT][hapmap]
rs2919125	0.81[TSI][hapmap]
rs2920884	1.00[ASW][hapmap]
rs36063689	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4233956	0.84[AMR][1000 genomes]
rs4504034	0.84[AMR][1000 genomes]
rs4525735	0.84[AMR][1000 genomes]
rs4671233	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61910689	0.90[AFR][1000 genomes]
rs6545462	1.00[JPT][hapmap]
rs67721747	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834069	chr2:55096597-55251680	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2304685	RTN4	cis	Thyroid	GTEx

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:55095200-55148200	Weak transcription	Primary B cells from peripheral blood	blood
2	chr2:55134000-55153800	Weak transcription	Brain Angular Gyrus	brain
3	chr2:55134200-55147600	Weak transcription	Fetal Brain Female	brain
4	chr2:55134400-55153600	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr2:55136200-55145600	Weak transcription	HepG2	liver
6	chr2:55143200-55147000	Weak transcription	Pancreatic Islets	Pancreatic Islet

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