Variant report

Variant	rs2305718
Chromosome Location	chr15:51984231-51984232
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:51984067..51985645-chr15:51997291..51999601,2	MCF-7	breast:
2	chr15:51984106..51987260-chr15:51989301..51991929,3	MCF-7	breast:
3	chr15:51978743..51984253-chr15:51984583..51988197,6	MCF-7	breast:
4	chr15:51983304..51986110-chr15:51988118..51990669,2	MCF-7	breast:
5	chr15:51971321..51974320-chr15:51980562..51984301,3	K562	blood:

Variant related genes	Relation type
ENSG00000259241	Chromatin interaction
ENSG00000104112	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs1456295	0.82[JPT][hapmap];0.86[ASN][1000 genomes]
rs3214015	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv471243	chr15:51345485-52018096	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv1035967	chr15:51949866-52008736	Bivalent Enhancer Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:51974200-52018800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr15:51974400-51990800	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr15:51974400-52005200	Weak transcription	Brain Anterior Caudate	brain
4	chr15:51974600-51991000	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr15:51974600-52016400	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr15:51974800-51984600	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr15:51975000-51993200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr15:51975200-51998400	Weak transcription	Brain Angular Gyrus	brain
9	chr15:51975600-52017200	Weak transcription	Fetal Brain Male	brain
10	chr15:51978600-51990600	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr15:51979800-51984400	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr15:51980200-51988000	Strong transcription	Brain Germinal Matrix	brain
13	chr15:51982200-51996600	Strong transcription	Fetal Brain Female	brain
14	chr15:51982400-51984400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr15:51983000-52013200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr15:51983200-51984400	Enhancers	K562	blood
17	chr15:51983200-51985400	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr15:51983400-51998400	Weak transcription	Brain Cingulate Gyrus	brain
19	chr15:51983600-51985000	Enhancers	Primary monocytes fromperipheralblood	blood
20	chr15:51983800-51984600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr15:51983800-51984600	Enhancers	Primary B cells from peripheral blood	blood
22	chr15:51983800-51985000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
23	chr15:51983800-51985000	Enhancers	Monocytes-CD14+_RO01746	blood
24	chr15:51983800-51990200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr15:51984000-51985400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
26	chr15:51984200-51984600	Enhancers	GM12878-XiMat	blood
27	chr15:51984200-51984800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
28	chr15:51984200-51984800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
29	chr15:51984200-51984800	Enhancers	Primary T helper cells PMA-I stimulated	--
30	chr15:51984200-51984800	Enhancers	Brain Hippocampus Middle	brain
31	chr15:51984200-51985200	Enhancers	Primary T helper cells fromperipheralblood	blood
32	chr15:51984200-51985400	Strong transcription	iPS-18 Cell Line	embryonic stem cell

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