Variant report

Variant	rs2305770
Chromosome Location	chr19:51961545-51961546
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs8108078	1.00[CHB][hapmap]
rs8109405	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066308	chr19:51680133-52103974	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv544049	chr19:51680133-52103974	Bivalent Enhancer Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
3	nsv458724	chr19:51925519-51975723	Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv579965	chr19:51925519-51975723	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv544051	chr19:51944903-52147459	Bivalent Enhancer Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:51957400-51964200	Weak transcription	Right Atrium	heart
2	chr19:51958200-51964000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr19:51959600-51961600	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
4	chr19:51959600-51961600	Active TSS	Brain Hippocampus Middle	brain
5	chr19:51960000-51961600	Active TSS	Brain Inferior Temporal Lobe	brain
6	chr19:51960000-51963800	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr19:51960400-51961600	Active TSS	Brain Anterior Caudate	brain
8	chr19:51960400-51962200	Active TSS	Brain Substantia Nigra	brain
9	chr19:51960400-51962600	Weak transcription	Primary monocytes fromperipheralblood	blood
10	chr19:51960600-51961800	Weak transcription	Placenta	Placenta
11	chr19:51960800-51963400	Weak transcription	Fetal Muscle Leg	muscle
12	chr19:51960800-51963800	Enhancers	Primary neutrophils fromperipheralblood	blood
13	chr19:51961400-51961600	Enhancers	Duodenum Mucosa	Duodenum
14	chr19:51961400-51963200	Weak transcription	Rectal Mucosa Donor 29	rectum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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