Variant report

Variant	rs230905
Chromosome Location	chr17:15235411-15235412
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:15235028..15236798-chr20:46132185..46133884,2	MCF-7	breast:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs16951395	0.81[AFR][1000 genomes]
rs230888	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs230889	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs230892	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs230903	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs230904	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs230906	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs230907	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs230909	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs230910	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs230977	0.81[ASN][1000 genomes]
rs2531955	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs364785	0.88[ASN][1000 genomes]
rs394106	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs396445	0.88[ASN][1000 genomes]
rs396895	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs406112	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs414494	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs417637	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs427476	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs427531	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs433068	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs433993	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs446597	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs450848	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs561167	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs609537	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066329	chr17:14983674-15294071	Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
2	nsv543212	chr17:14983674-15294071	Active TSS Genic enhancers Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
3	nsv492304	chr17:15043353-15611753	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
4	nsv916652	chr17:15093600-15856310	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
5	nsv427990	chr17:15154329-15434020	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
6	nsv907703	chr17:15199907-15370701	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
7	nsv949172	chr17:15206970-15416808	Active TSS Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:15234400-15235600	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr17:15234400-15235600	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr17:15234400-15235600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr17:15234600-15235600	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr17:15234600-15235600	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr17:15234600-15235600	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr17:15234600-15235800	Enhancers	H1 Cell Line	embryonic stem cell
8	chr17:15234600-15235800	Enhancers	H9 Cell Line	embryonic stem cell
9	chr17:15234600-15235800	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr17:15235200-15236000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
11	chr17:15235400-15235600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr17:15235400-15235600	Active TSS	iPS-20b Cell Line	embryonic stem cell

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