Variant report
Variant | rs230931 |
---|---|
Chromosome Location | chr17:15123293-15123294 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs13422 | 0.95[EUR][1000 genomes] |
rs179520 | 0.92[EUR][1000 genomes] |
rs1860295 | 0.92[EUR][1000 genomes] |
rs192046 | 0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs230930 | 0.81[AMR][1000 genomes];0.82[ASN][1000 genomes] |
rs230934 | 0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs230935 | 0.86[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs230936 | 0.86[AMR][1000 genomes];0.97[EUR][1000 genomes] |
rs230937 | 0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs230939 | 0.95[EUR][1000 genomes] |
rs230941 | 0.95[EUR][1000 genomes] |
rs230942 | 0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs230943 | 0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs230944 | 0.95[EUR][1000 genomes] |
rs230946 | 0.94[EUR][1000 genomes] |
rs230947 | 0.81[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs230949 | 0.91[EUR][1000 genomes] |
rs230950 | 0.92[EUR][1000 genomes] |
rs2531951 | 0.92[EUR][1000 genomes] |
rs66507245 | 0.80[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1066329 | chr17:14983674-15294071 | Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 22 gene(s) | inside rSNPs | diseases |
2 | nsv543212 | chr17:14983674-15294071 | Active TSS Genic enhancers Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 22 gene(s) | inside rSNPs | diseases |
3 | nsv492304 | chr17:15043353-15611753 | Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 58 gene(s) | inside rSNPs | diseases |
4 | nsv916652 | chr17:15093600-15856310 | Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 73 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr17:15117000-15127000 | Weak transcription | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
2 | chr17:15123000-15125000 | Enhancers | NHDF-Ad | bronchial |