Variant report

Variant	rs2309719
Chromosome Location	chr4:28258649-28258650
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:28250932..28252877-chr4:28258157..28260159,2	MCF-7	breast:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10011359	0.80[EUR][1000 genomes]
rs10021592	0.80[EUR][1000 genomes]
rs10433806	0.80[EUR][1000 genomes]
rs10433807	0.80[EUR][1000 genomes]
rs10433842	0.80[EUR][1000 genomes]
rs12644493	0.80[EUR][1000 genomes]
rs1391219	0.81[ASN][1000 genomes]
rs1497699	0.81[EUR][1000 genomes]
rs1497701	0.80[EUR][1000 genomes]
rs17681723	0.80[EUR][1000 genomes]
rs2036181	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2036182	0.81[ASN][1000 genomes]
rs2036183	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2309718	0.80[ASN][1000 genomes]
rs2309722	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28467171	0.80[EUR][1000 genomes]
rs28491807	0.80[EUR][1000 genomes]
rs28859954	0.80[EUR][1000 genomes]
rs28889732	0.80[EUR][1000 genomes]
rs4484281	0.81[ASN][1000 genomes]
rs4692301	0.80[EUR][1000 genomes]
rs4692306	0.81[ASN][1000 genomes]
rs4692307	0.81[ASN][1000 genomes]
rs57209669	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs58122848	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs58189113	0.81[ASN][1000 genomes]
rs66538132	0.81[ASN][1000 genomes]
rs66953666	0.80[ASN][1000 genomes]
rs67575578	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs67596549	0.81[ASN][1000 genomes]
rs67773111	0.81[ASN][1000 genomes]
rs68027003	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs68152757	0.80[ASN][1000 genomes]
rs73221862	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73221869	0.81[ASN][1000 genomes]
rs73221870	0.81[ASN][1000 genomes]
rs73221871	0.81[ASN][1000 genomes]
rs73221872	0.81[ASN][1000 genomes]
rs7436389	0.81[ASN][1000 genomes]
rs924237	0.81[ASN][1000 genomes]
rs924240	0.81[ASN][1000 genomes]
rs9999649	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005382	chr4:28157180-28403800	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv878775	chr4:28163856-28473048	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1000514	chr4:28192982-28445194	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv878776	chr4:28208093-28267024	Active TSS Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv878777	chr4:28208093-28343903	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv878778	chr4:28237783-28343903	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv1012210	chr4:28246489-28419673	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:28235000-28279200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:28256000-28259800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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