Variant report

Variant	rs2309745
Chromosome Location	chr9:73232155-73232156
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1339900	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2153365	1.00[EUR][1000 genomes]
rs2185338	1.00[EUR][1000 genomes]
rs4269601	1.00[EUR][1000 genomes]
rs7866389	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893440	chr9:73225802-73434585	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	76 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:73215800-73236800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr9:73217400-73233400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr9:73217400-73242400	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr9:73217600-73236400	Weak transcription	Fetal Kidney	kidney
5	chr9:73224800-73241600	Weak transcription	Ovary	ovary
6	chr9:73227200-73236600	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr9:73228000-73236600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr9:73228200-73235800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
9	chr9:73228200-73236800	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr9:73228800-73232400	Enhancers	Brain Substantia Nigra	brain
11	chr9:73229600-73232200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr9:73229800-73232400	Enhancers	Fetal Brain Male	brain
13	chr9:73230000-73232200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr9:73230200-73237400	Weak transcription	Aorta	Aorta
15	chr9:73230400-73232400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr9:73230400-73232400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr9:73230400-73235400	Strong transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr9:73230400-73237200	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr9:73230600-73232200	Enhancers	Skeletal Muscle Female	skeletal muscle
20	chr9:73230600-73232800	Enhancers	Skeletal Muscle Male	skeletal muscle
21	chr9:73230600-73243200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr9:73230800-73232200	Enhancers	Brain Inferior Temporal Lobe	brain
23	chr9:73230800-73233400	Weak transcription	Right Ventricle	heart
24	chr9:73230800-73243000	Weak transcription	Brain Anterior Caudate	brain
25	chr9:73231000-73233800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr9:73231600-73232200	Enhancers	Fetal Muscle Trunk	muscle
27	chr9:73231600-73232200	Enhancers	Psoas Muscle	Psoas
28	chr9:73231600-73235400	Weak transcription	Brain Cingulate Gyrus	brain
29	chr9:73231800-73233400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr9:73231800-73233600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr9:73231800-73236400	Weak transcription	Brain Angular Gyrus	brain
32	chr9:73232000-73233600	Weak transcription	Fetal Muscle Leg	muscle
33	chr9:73232000-73235800	Weak transcription	Fetal Brain Female	brain
34	chr9:73232000-73237000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links