Variant report

Variant	rs231011
Chromosome Location	chr17:15182209-15182210
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:15166393..15169688-chr17:15179101..15182406,4	MCF-7	breast:
2	chr17:15176128..15178880-chr17:15180153..15182408,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000109099	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1079974	1.00[YRI][hapmap]
rs1870428	1.00[YRI][hapmap]
rs231012	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2323653	1.00[YRI][hapmap]
rs9944503	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066329	chr17:14983674-15294071	Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
2	nsv543212	chr17:14983674-15294071	Active TSS Genic enhancers Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
3	nsv492304	chr17:15043353-15611753	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
4	nsv916652	chr17:15093600-15856310	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
5	nsv427990	chr17:15154329-15434020	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
6	esv3315142	chr17:15182127-15186725	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:15173200-15192600	Weak transcription	Left Ventricle	heart
2	chr17:15180000-15182400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr17:15180800-15183600	Enhancers	Hela-S3	cervix
4	chr17:15181200-15182400	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr17:15181600-15182400	Enhancers	H1 Cell Line	embryonic stem cell
6	chr17:15181600-15182400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr17:15181600-15182400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
8	chr17:15181600-15182400	Flanking Active TSS	NHDF-Ad	bronchial
9	chr17:15181600-15182400	Flanking Active TSS	Osteobl	bone
10	chr17:15181600-15182600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
11	chr17:15181600-15183400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
12	chr17:15181600-15183400	Flanking Active TSS	A549	lung
13	chr17:15181800-15182400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr17:15181800-15182400	Enhancers	Brain Germinal Matrix	brain
15	chr17:15181800-15182400	Enhancers	Fetal Lung	lung
16	chr17:15181800-15182400	Active TSS	Stomach Smooth Muscle	stomach
17	chr17:15181800-15182400	Enhancers	HSMM	muscle
18	chr17:15181800-15182400	Enhancers	NHEK	skin
19	chr17:15181800-15183000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr17:15181800-15183200	Enhancers	HSMMtube	muscle
21	chr17:15182000-15182400	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
22	chr17:15182000-15182400	Enhancers	iPS-15b Cell Line	embryonic stem cell
23	chr17:15182000-15182400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr17:15182000-15183000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr17:15182000-15183000	Weak transcription	Right Atrium	heart
26	chr17:15182200-15182400	Enhancers	Brain Anterior Caudate	brain
27	chr17:15182200-15182400	Enhancers	Brain Cingulate Gyrus	brain
28	chr17:15182200-15182600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr17:15182200-15183200	Enhancers	HMEC	breast
30	chr17:15182200-15183200	Enhancers	NH-A	brain
31	chr17:15182200-15183200	Enhancers	NHLF	lung
32	chr17:15182200-15183600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr17:15182200-15187600	Weak transcription	Fetal Heart	heart

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