Variant report

Variant	rs2311340
Chromosome Location	chr10:45829807-45829808
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10793616	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11239484	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1816492	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1864415	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4483541	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4948671	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4948998	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4948999	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6593479	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7076696	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7477350	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7909514	0.84[EUR][1000 genomes]
rs934187	0.89[EUR][1000 genomes]
rs9988764	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895105	chr10:45636867-45928822	Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv430166	chr10:45668894-46148794	Bivalent Enhancer Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv993428	chr10:45742877-46224333	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs2311340	ANUBL1	cis	parietal	SCAN
rs2311340	ALOX5	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:45829800-45830200	Enhancers	Spleen	Spleen

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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