Variant report

Variant	rs2315314
Chromosome Location	chr6:161902154-161902155
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10455786	0.91[CEU][hapmap];0.81[JPT][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10455886	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10455887	0.95[CEU][hapmap];0.80[JPT][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10455889	0.91[CEU][hapmap];0.93[GIH][hapmap];0.81[JPT][hapmap];0.84[MEX][hapmap];0.88[TSI][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12175609	0.81[JPT][hapmap]
rs12198768	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4142066	0.95[CEU][hapmap];0.86[JPT][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4142068	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4142069	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4142070	1.00[ASW][hapmap];1.00[CEU][hapmap];0.96[GIH][hapmap];0.86[JPT][hapmap];0.88[LWK][hapmap];0.90[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs61114332	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9346859	0.91[CHB][hapmap];0.93[CHD][hapmap];0.83[GIH][hapmap];0.81[JPT][hapmap];0.91[ASN][1000 genomes]
rs9346860	0.95[CEU][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9346861	0.83[CEU][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9347516	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9355349	0.95[CEU][hapmap];0.80[JPT][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9355902	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9355903	0.95[CEU][hapmap];0.86[JPT][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9364599	0.95[CEU][hapmap];0.93[GIH][hapmap];0.91[JPT][hapmap];0.92[MEX][hapmap];0.88[TSI][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9364600	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9365293	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9365294	0.91[CEU][hapmap];0.93[GIH][hapmap];0.85[JPT][hapmap];0.84[MEX][hapmap];0.88[TSI][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv481931	chr6:161647026-161961906	Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv1031234	chr6:161676768-162250726	Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv886819	chr6:161712035-162520133	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv886820	chr6:161712880-162184932	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv830854	chr6:161739926-161927515	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv518931	chr6:161793319-162406335	Enhancers Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv481861	chr6:161802883-162160197	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv481981	chr6:161829077-162215745	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv1033603	chr6:161844266-162001436	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv481750	chr6:161850976-161996586	Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv481932	chr6:161862158-162097499	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv886822	chr6:161891388-161958898	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv886823	chr6:161891388-161971398	Weak transcription Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
14	nsv886824	chr6:161891388-161982988	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
15	nsv886825	chr6:161891388-162184932	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:161898000-161903400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr6:161898000-161903600	Weak transcription	Left Ventricle	heart
3	chr6:161898000-161905600	Weak transcription	Pancreas	Pancrea
4	chr6:161898200-161910800	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr6:161898400-161903200	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr6:161898800-161906400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr6:161900600-161902200	Enhancers	Fetal Brain Female	brain
8	chr6:161900600-161902200	Enhancers	Skeletal Muscle Female	skeletal muscle
9	chr6:161900800-161902200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr6:161900800-161902200	Enhancers	Fetal Brain Male	brain
11	chr6:161900800-161902600	Enhancers	Psoas Muscle	Psoas
12	chr6:161900800-161904600	Enhancers	Skeletal Muscle Male	skeletal muscle
13	chr6:161900800-161905000	Enhancers	Adipose Nuclei	Adipose
14	chr6:161901200-161908000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr6:161901200-161914600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr6:161901400-161902200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr6:161901400-161902200	Enhancers	Brain Hippocampus Middle	brain
18	chr6:161901600-161904200	Enhancers	Brain Anterior Caudate	brain
19	chr6:161901600-161904800	Enhancers	Fetal Kidney	kidney
20	chr6:161901800-161903400	Weak transcription	Brain Cingulate Gyrus	brain
21	chr6:161902000-161902200	Enhancers	Right Atrium	heart
22	chr6:161902000-161903200	Weak transcription	Cortex derived primary cultured neurospheres	brain

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