Variant report

Variant	rs2320728
Chromosome Location	chr4:18540138-18540139
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:18529573..18532422-chr4:18538529..18540448,2	MCF-7	breast:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10009025	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1075227	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10939790	0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1319493	0.93[EUR][1000 genomes]
rs1382094	0.80[ASN][1000 genomes]
rs1477885	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1477887	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1477888	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1477889	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1477891	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1477900	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1477901	0.80[EUR][1000 genomes]
rs1477902	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1813553	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1827849	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2016590	0.93[EUR][1000 genomes]
rs2320730	0.84[CEU][hapmap]
rs2616461	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2616462	0.85[EUR][1000 genomes]
rs2616464	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2616473	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2643426	0.90[EUR][1000 genomes]
rs2643427	0.90[EUR][1000 genomes]
rs2643431	0.93[EUR][1000 genomes]
rs2643434	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2643435	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2643436	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2643437	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2643438	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2643452	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2658121	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2658122	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2658124	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7674574	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7696548	0.83[AFR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs964095	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs985935	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003931	chr4:18241575-18849898	Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv533087	chr4:18362040-19176896	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:18538600-18541400	Weak transcription	HUVEC	blood vessel
2	chr4:18539600-18540600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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