Variant report
| Variant | rs2323884 |
|---|---|
| Chromosome Location | chr13:39119386-39119387 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:2)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:2 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-STOML3-3 | chr13:39119324-39119436 | XLOC_010572 |
| 2 | lnc-STOML3-3 | chr13:39119324-39119435 | NONHSAT033275 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:17)
| rs_ID | r2[population] |
|---|---|
| rs2323888 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs2323935 | 0.81[AFR][1000 genomes] |
| rs2323940 | 0.83[AFR][1000 genomes] |
| rs2595567 | 1.00[AMR][1000 genomes] |
| rs2805080 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs2805082 | 1.00[AMR][1000 genomes] |
| rs2805083 | 1.00[AMR][1000 genomes] |
| rs2805084 | 1.00[AMR][1000 genomes] |
| rs2805085 | 1.00[AMR][1000 genomes] |
| rs4435116 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs4583091 | 0.80[AFR][1000 genomes] |
| rs4941895 | 0.85[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7140036 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7333077 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9315593 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9594280 | 1.00[AMR][1000 genomes] |
| rs9603394 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv869125 | chr13:38550449-39132813 | Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 10 gene(s) | inside rSNPs | diseases |
| 2 | nsv832584 | chr13:39074265-39284724 | Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
