Variant report

Variant	rs2327185
Chromosome Location	chr6:132290449-132290450
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1930997	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2327184	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4897555	1.00[CEU][hapmap];0.86[YRI][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6925916	1.00[YRI][hapmap]
rs7763896	0.91[CEU][hapmap];0.97[EUR][1000 genomes]
rs933020	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv7968	chr6:131917172-132321099	Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132275600-132299800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr6:132276600-132297800	Weak transcription	Ovary	ovary
3	chr6:132277400-132291200	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr6:132277400-132305600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr6:132280800-132293800	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr6:132282000-132291400	Weak transcription	Fetal Brain Male	brain
7	chr6:132285400-132297800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr6:132288200-132291200	Weak transcription	HepG2	liver
9	chr6:132288200-132291400	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr6:132290000-132291600	Weak transcription	Stomach Mucosa	stomach
11	chr6:132290000-132298000	Weak transcription	Fetal Lung	lung
12	chr6:132290200-132291600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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