Variant report

Variant	rs2327352
Chromosome Location	chr6:133854439-133854440
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs3822939	0.82[AFR][1000 genomes]
rs478907	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9385650	0.97[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9483586	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886681	chr6:133833284-133869617	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133823200-133869600	Weak transcription	Psoas Muscle	Psoas
2	chr6:133824400-133854800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr6:133824400-133861600	Weak transcription	Ovary	ovary
4	chr6:133825600-133857200	Weak transcription	Fetal Muscle Trunk	muscle
5	chr6:133826600-133862400	Weak transcription	Fetal Lung	lung
6	chr6:133837400-133863600	Weak transcription	A549	lung
7	chr6:133845400-133856400	Weak transcription	Fetal Kidney	kidney
8	chr6:133845400-133860400	Weak transcription	HSMMtube	muscle
9	chr6:133847800-133856400	Weak transcription	Hela-S3	cervix
10	chr6:133852400-133854800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr6:133853800-133854600	Strong transcription	Cortex derived primary cultured neurospheres	brain
12	chr6:133854000-133854600	Strong transcription	Skeletal Muscle Female	skeletal muscle
13	chr6:133854000-133855000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr6:133854000-133855200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr6:133854200-133854800	Strong transcription	Fetal Muscle Leg	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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