Variant report
| Variant | rs2328815 |
|---|---|
| Chromosome Location | chr6:24162956-24162957 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
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| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | STAT3 | chr6:24162902-24163102 | MCF10A-Er-Src | breast: | n/a | n/a |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:24156672..24158492-chr6:24162411..24164152,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000251830 | TF binding region |
rSNPs within LD-proxies of this variant (count:18)
| rs_ID | r2[population] |
|---|---|
| rs10946676 | 0.98[EUR][1000 genomes] |
| rs10946678 | 1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11962646 | 0.84[AFR][1000 genomes] |
| rs12333304 | 0.80[YRI][hapmap];0.83[AFR][1000 genomes] |
| rs1833033 | 0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs6456592 | 0.86[EUR][1000 genomes] |
| rs73391905 | 0.93[AFR][1000 genomes] |
| rs7356917 | 0.96[YRI][hapmap];0.93[AFR][1000 genomes] |
| rs7357020 | 0.96[YRI][hapmap];0.93[AFR][1000 genomes] |
| rs7754552 | 0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7759190 | 0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9366565 | 1.00[CEU][hapmap];0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9393531 | 0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs9467055 | 0.93[YRI][hapmap];0.89[AFR][1000 genomes] |
| rs9467056 | 0.85[YRI][hapmap];0.86[AFR][1000 genomes] |
| rs9467057 | 0.86[AFR][1000 genomes] |
| rs9467060 | 0.85[AFR][1000 genomes] |
| rs9467061 | 0.81[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1029930 | chr6:23481989-24289948 | Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
| 2 | esv1798372 | chr6:24158542-24181477 | Weak transcription Strong transcription Enhancers | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:24153800-24200800 | Weak transcription | H1 Derived Mesenchymal Stem Cells | ES cell derived |
