Variant report

Variant	rs2329364
Chromosome Location	chr7:50581699-50581700
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:50569843..50571376-chr7:50579895..50581810,2	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10228056	1.00[ASW][hapmap];1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10244632	0.86[JPT][hapmap]
rs10249982	0.86[JPT][hapmap]
rs11575351	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11575388	1.00[CEU][hapmap]
rs11575450	1.00[CEU][hapmap]
rs11763051	1.00[CEU][hapmap];0.88[YRI][hapmap]
rs11771860	1.00[CEU][hapmap];0.88[YRI][hapmap]
rs12535064	0.86[JPT][hapmap]
rs12538830	0.86[JPT][hapmap]
rs1304692	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17133842	1.00[CEU][hapmap]
rs17133877	0.85[CHB][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.83[TSI][hapmap];0.87[ASN][1000 genomes]
rs17133881	1.00[CEU][hapmap]
rs17152014	1.00[CEU][hapmap]
rs1982406	0.86[JPT][hapmap]
rs2100280	0.85[JPT][hapmap];0.82[MKK][hapmap]
rs2122819	0.86[EUR][1000 genomes]
rs2122820	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2167363	0.88[YRI][hapmap]
rs3735274	0.86[JPT][hapmap]
rs4245549	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs4585697	0.93[JPT][hapmap]
rs4947631	0.82[ASW][hapmap];1.00[CEU][hapmap];0.81[LWK][hapmap];1.00[TSI][hapmap];0.88[YRI][hapmap]
rs57716050	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6592963	0.86[JPT][hapmap];0.82[MKK][hapmap]
rs9918702	0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016665	chr7:50452552-51404524	Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv888021	chr7:50538589-50610071	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1015758	chr7:50565404-50768153	Flanking Active TSS Genic enhancers Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv1023228	chr7:50573214-50777634	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:50543600-50595000	Weak transcription	Liver	Liver
2	chr7:50565200-50609000	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr7:50569000-50592800	Weak transcription	HepG2	liver
4	chr7:50571000-50582400	Weak transcription	Right Atrium	heart
5	chr7:50577000-50583400	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr7:50580200-50581800	Enhancers	Pancreas	Pancrea
7	chr7:50580600-50581800	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chr7:50580800-50581800	Enhancers	Esophagus	oesophagus
9	chr7:50581000-50581800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr7:50581000-50581800	Enhancers	Skeletal Muscle Male	skeletal muscle
11	chr7:50581200-50582000	Genic enhancers	Fetal Intestine Large	intestine
12	chr7:50581200-50582000	Genic enhancers	Fetal Intestine Small	intestine
13	chr7:50581400-50581800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr7:50581400-50581800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr7:50581400-50581800	Enhancers	K562	blood
16	chr7:50581400-50582000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr7:50581600-50581800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr7:50581600-50582000	Strong transcription	Duodenum Mucosa	Duodenum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links