Variant report

Variant	rs2329841
Chromosome Location	chr21:46085820-46085821
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr21:46080081..46082771-chr21:46085171..46086703,2	MCF-7	breast:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10854463	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12106369	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12482870	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1296488	0.80[ASN][1000 genomes]
rs13046903	0.83[ASN][1000 genomes]
rs1883039	0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1883041	0.81[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs2073437	0.88[ASN][1000 genomes]
rs2210284	0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs2225433	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2256361	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2256490	0.81[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs2256496	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2329838	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2329839	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2329840	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2329842	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2329843	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2838614	0.91[ASN][1000 genomes]
rs2838617	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2838618	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2838619	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2838623	0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2838624	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2838625	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2838627	0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs34979768	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs35163632	0.83[ASN][1000 genomes]
rs3966427	0.82[ASN][1000 genomes]
rs4818728	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4818953	0.91[ASN][1000 genomes]
rs7275203	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7275666	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7277758	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7282198	0.84[EUR][1000 genomes]
rs7282421	0.92[ASN][1000 genomes]
rs926193	0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs9306111	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs9306112	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9974195	0.90[ASN][1000 genomes]
rs9982452	0.81[ASN][1000 genomes]
rs9983049	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs9983129	0.80[ASN][1000 genomes]
rs9983892	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9984726	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1065798	chr21:45941000-46097463	Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv869108	chr21:45941000-46097463	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv544476	chr21:45941000-46097463	Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
4	nsv913950	chr21:45985068-46097463	Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	nsv916258	chr21:45995986-46624705	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	102 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:46079200-46086600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr21:46079400-46089600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links