Variant report

Variant	rs2332232
Chromosome Location	chr14:24756284-24756285
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:24753288..24756809-chr14:24765921..24769066,3	K562	blood:
2	chr14:24755234..24758194-chr14:24801992..24804647,2	MCF-7	breast:
3	chr14:24751698..24753375-chr14:24755216..24757197,2	K562	blood:
4	chr14:24742260..24745882-chr14:24750433..24756794,5	K562	blood:
5	chr14:24749361..24751415-chr14:24753951..24756664,2	K562	blood:
6	chr14:24752462..24755540-chr14:24756043..24759488,4	K562	blood:
7	chr14:24740560..24742174-chr14:24754055..24756469,2	K562	blood:

Variant related genes	Relation type
ENSG00000100949	Chromatin interaction
ENSG00000129467	Chromatin interaction
ENSG00000157379	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10138762	0.83[ASN][1000 genomes]
rs10144194	0.83[ASN][1000 genomes]
rs1053648	0.81[ASN][1000 genomes]
rs1053649	0.81[ASN][1000 genomes]
rs12587807	0.82[ASN][1000 genomes]
rs12891891	0.83[ASN][1000 genomes]
rs12896458	0.83[ASN][1000 genomes]
rs1950505	0.81[ASN][1000 genomes]
rs2144492	0.81[ASN][1000 genomes]
rs2180197	0.81[ASN][1000 genomes]
rs2295303	0.80[ASN][1000 genomes]
rs3181382	0.80[ASN][1000 genomes]
rs3742510	0.80[ASN][1000 genomes]
rs3742511	0.80[ASN][1000 genomes]
rs6573678	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041336	chr14:24726564-25527319	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542000	chr14:24726564-25527319	Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:24741200-24758800	Weak transcription	Aorta	Aorta
2	chr14:24741200-24768200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr14:24741400-24757800	Weak transcription	Fetal Stomach	stomach
4	chr14:24741400-24758600	Weak transcription	Stomach Smooth Muscle	stomach
5	chr14:24741400-24758800	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr14:24741600-24758400	Weak transcription	Fetal Intestine Large	intestine
7	chr14:24741600-24758600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr14:24741600-24758600	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr14:24741600-24759200	Weak transcription	Small Intestine	intestine
10	chr14:24741600-24767800	Weak transcription	Fetal Brain Male	brain
11	chr14:24741800-24758800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr14:24742000-24758600	Weak transcription	Thymus	Thymus
13	chr14:24743400-24758600	Weak transcription	Gastric	stomach
14	chr14:24743800-24758600	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr14:24743800-24759000	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr14:24745200-24756400	Weak transcription	HepG2	liver
17	chr14:24745200-24758800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr14:24746400-24758600	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr14:24746800-24758600	Weak transcription	Colonic Mucosa	Colon
20	chr14:24748000-24764800	Weak transcription	K562	blood
21	chr14:24748600-24758600	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr14:24748600-24768200	Weak transcription	Psoas Muscle	Psoas
23	chr14:24748800-24756400	Weak transcription	Fetal Intestine Small	intestine
24	chr14:24748800-24758600	Weak transcription	Brain Anterior Caudate	brain
25	chr14:24748800-24764800	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr14:24749000-24758600	Weak transcription	HSMM	muscle
27	chr14:24749000-24758800	Weak transcription	Pancreas	Pancrea
28	chr14:24749000-24768200	Weak transcription	Right Atrium	heart
29	chr14:24749200-24758600	Weak transcription	Primary hematopoietic stem cells	blood
30	chr14:24749200-24758600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr14:24749200-24758600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr14:24749200-24758600	Weak transcription	Fetal Thymus	thymus
33	chr14:24749200-24759400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr14:24749400-24758600	Weak transcription	Liver	Liver
35	chr14:24749400-24758600	Weak transcription	Duodenum Mucosa	Duodenum
36	chr14:24749400-24758800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
37	chr14:24749400-24758800	Weak transcription	Brain Inferior Temporal Lobe	brain
38	chr14:24749400-24759000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
39	chr14:24749400-24759400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
40	chr14:24749400-24763800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
41	chr14:24749600-24758600	Weak transcription	Primary T cells from cord blood	blood
42	chr14:24749600-24758600	Weak transcription	Primary T cells fromperipheralblood	blood
43	chr14:24749600-24758600	Weak transcription	Primary T helper cells fromperipheralblood	blood
44	chr14:24749600-24758600	Weak transcription	Brain Cingulate Gyrus	brain
45	chr14:24749600-24758600	Weak transcription	Brain Hippocampus Middle	brain
46	chr14:24749600-24758600	Weak transcription	Brain Substantia Nigra	brain
47	chr14:24749800-24758600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
48	chr14:24750000-24758800	Weak transcription	Brain Angular Gyrus	brain
49	chr14:24750200-24758600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr14:24750200-24758600	Weak transcription	Skeletal Muscle Female	skeletal muscle

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