Variant report

Variant	rs2332545
Chromosome Location	chr4:173591896-173591897
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:62608628..62609409-chr4:173591389..173591909,2	HCT-116	colon:

Variant related genes	Relation type
ENSG00000133316	Chromatin interaction

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs1097576	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11132963	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11945702	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12498866	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13103310	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13146845	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1370574	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1370580	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1370582	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1370583	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1437841	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1540465	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1821863	0.85[AMR][1000 genomes]
rs1837131	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2877718	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55865394	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56144313	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56340131	1.00[EUR][1000 genomes]
rs60485425	1.00[EUR][1000 genomes]
rs6553650	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6553651	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6553655	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6840747	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6851573	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6852120	0.86[YRI][hapmap]
rs6852353	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6853958	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73869559	1.00[EUR][1000 genomes]
rs73869574	1.00[EUR][1000 genomes]
rs73869580	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73869582	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73869631	1.00[EUR][1000 genomes]
rs73869633	1.00[EUR][1000 genomes]
rs7663585	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7671571	1.00[EUR][1000 genomes]
rs837197	0.93[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs837198	0.92[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs837199	0.93[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs837201	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs837205	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs837206	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs837208	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9654310	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031592	chr4:173112542-173662991	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv537359	chr4:173112542-173662991	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv534293	chr4:173121379-173606082	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv948856	chr4:173388217-173967546	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv949126	chr4:173466221-174051451	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv880685	chr4:173562564-173661711	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv880613	chr4:173569281-173661711	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	esv3327952	chr4:173591786-173805861	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:173589000-173595400	Weak transcription	Placenta Amnion	Placenta Amnion

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