Variant report

Variant	rs233270
Chromosome Location	chr21:46041157-46041158
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs1211103	0.87[CEU][hapmap];0.81[GIH][hapmap]
rs1211121	0.85[CEU][hapmap]
rs1211123	0.86[CEU][hapmap]
rs1211129	0.84[EUR][1000 genomes]
rs1211130	0.84[EUR][1000 genomes]
rs170849	1.00[CEU][hapmap];1.00[TSI][hapmap];0.87[EUR][1000 genomes]
rs233262	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs233263	0.87[EUR][1000 genomes]
rs233264	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs233265	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs233267	1.00[EUR][1000 genomes]
rs233268	1.00[CEU][hapmap];0.93[GIH][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes]
rs233269	0.95[EUR][1000 genomes]
rs233271	0.80[CHB][hapmap];0.95[EUR][1000 genomes]
rs233272	1.00[CEU][hapmap];0.80[CHB][hapmap];0.93[GIH][hapmap];0.87[JPT][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes]
rs367771	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs371248	0.85[CEU][hapmap]
rs377234	0.87[CEU][hapmap];0.82[GIH][hapmap]
rs377263	0.87[CEU][hapmap];0.85[CHB][hapmap];0.89[GIH][hapmap]
rs382935	0.87[CEU][hapmap];0.82[GIH][hapmap]
rs384645	0.87[CEU][hapmap]
rs392451	0.85[CEU][hapmap]
rs392686	0.87[CEU][hapmap];0.82[GIH][hapmap];0.81[EUR][1000 genomes]
rs395781	0.84[EUR][1000 genomes]
rs398680	0.87[CEU][hapmap];0.82[GIH][hapmap]
rs400406	0.87[CHB][hapmap]
rs403981	0.87[CEU][hapmap];0.82[GIH][hapmap]
rs404341	0.87[CEU][hapmap];0.82[GIH][hapmap]
rs408958	0.87[CEU][hapmap]
rs409239	0.84[EUR][1000 genomes]
rs411254	0.87[CEU][hapmap];1.00[TSI][hapmap];0.85[EUR][1000 genomes]
rs415753	0.87[CEU][hapmap];0.81[EUR][1000 genomes]
rs416056	0.85[CEU][hapmap]
rs423954	0.85[EUR][1000 genomes]
rs425276	0.84[EUR][1000 genomes]
rs425823	0.87[CEU][hapmap];0.85[EUR][1000 genomes]
rs438444	0.85[CHB][hapmap]
rs442226	0.87[CEU][hapmap]
rs442600	1.00[CEU][hapmap]
rs445214	1.00[CEU][hapmap];1.00[TSI][hapmap]
rs446817	0.87[CEU][hapmap]
rs451948	0.85[EUR][1000 genomes]
rs452002	0.87[CEU][hapmap];0.82[GIH][hapmap]
rs456019	0.87[CEU][hapmap];0.89[GIH][hapmap];1.00[TSI][hapmap];0.88[EUR][1000 genomes]
rs459644	0.85[CHB][hapmap]
rs487102	0.87[CEU][hapmap];1.00[TSI][hapmap];0.85[EUR][1000 genomes]
rs659638	0.87[CEU][hapmap];0.82[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1065798	chr21:45941000-46097463	Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv869108	chr21:45941000-46097463	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv544476	chr21:45941000-46097463	Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
4	nsv913950	chr21:45985068-46097463	Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	nsv916258	chr21:45995986-46624705	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	102 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:46018400-46048400	Weak transcription	Right Atrium	heart
2	chr21:46040200-46043000	Weak transcription	Primary T killer memory cells from peripheral blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links