Variant report

Variant	rs2332829
Chromosome Location	chr14:72824870-72824871
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10138180	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1072167	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1520331	0.82[EUR][1000 genomes]
rs1520332	0.84[EUR][1000 genomes]
rs2108361	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2108362	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2239224	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2239225	0.98[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2239231	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2239233	0.92[EUR][1000 genomes]
rs2239248	0.83[EUR][1000 genomes]
rs2239249	0.82[EUR][1000 genomes]
rs2283390	0.85[EUR][1000 genomes]
rs2332831	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2529460	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2529461	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2529466	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2681728	0.92[EUR][1000 genomes]
rs2681742	0.92[EUR][1000 genomes]
rs2681748	0.81[AMR][1000 genomes]
rs2681754	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2681765	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4903013	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6574067	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6574068	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6574070	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6574071	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7146606	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7149872	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs8022289	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs847326	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs847327	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs847332	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs847333	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530794	chr14:72113818-73034008	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv948800	chr14:72462557-73150701	Enhancers Bivalent Enhancer Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72824000-72825200	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr14:72824200-72825200	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
3	chr14:72824800-72825200	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr14:72824800-72825200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell

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