Variant report

Variant	rs2333874
Chromosome Location	chr8:105426922-105426923
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ESR1	chr8:105426855-105427343	T-47D	breast:	n/a	n/a
2	ESR1	chr8:105426903-105427570	T-47D	breast:	n/a	n/a
3	ESR1	chr8:105426920-105427592	T-47D	breast:	n/a	n/a
4	ESR1	chr8:105426846-105427509	T-47D	breast:	n/a	n/a

Variant related genes	Relation type
DPYS	TF binding region

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10505058	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.87[MKK][hapmap];0.97[TSI][hapmap];0.88[YRI][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10808391	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12548603	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4734794	1.00[CEU][hapmap];0.95[TSI][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6468925	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6468926	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.88[YRI][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6468927	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016087	chr8:105228670-105934368	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1026754	chr8:105382508-106030916	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
3	nsv539709	chr8:105382508-106030916	Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:105424400-105429200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr8:105424400-105430200	Weak transcription	Fetal Thymus	thymus
3	chr8:105424600-105428400	Weak transcription	Brain Anterior Caudate	brain
4	chr8:105424600-105428800	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr8:105424600-105429000	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr8:105424600-105429200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr8:105424600-105430400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr8:105424800-105428600	Weak transcription	Fetal Brain Male	brain
9	chr8:105424800-105430000	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr8:105424800-105430200	Weak transcription	Right Atrium	heart
11	chr8:105425000-105427000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr8:105425000-105429000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr8:105425000-105429000	Weak transcription	Brain Hippocampus Middle	brain
14	chr8:105425200-105428400	Weak transcription	Primary monocytes fromperipheralblood	blood
15	chr8:105425200-105428600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr8:105425200-105428600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr8:105425200-105428800	Weak transcription	Fetal Lung	lung
18	chr8:105425200-105429200	Weak transcription	Adipose Nuclei	Adipose
19	chr8:105425200-105430200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr8:105425400-105428600	Weak transcription	Monocytes-CD14+_RO01746	blood
21	chr8:105426200-105428600	Strong transcription	Liver	Liver
22	chr8:105426600-105427600	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr8:105426800-105427000	Weak transcription	Psoas Muscle	Psoas

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