Variant report

Variant	rs2336229
Chromosome Location	chr5:75165628-75165629
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs16872989	0.82[EUR][1000 genomes]
rs17673063	0.87[EUR][1000 genomes]
rs17673089	0.87[EUR][1000 genomes]
rs17673107	0.87[EUR][1000 genomes]
rs17746011	0.87[EUR][1000 genomes]
rs4703688	0.85[EUR][1000 genomes]
rs4704265	0.87[EUR][1000 genomes]
rs6865457	0.82[EUR][1000 genomes]
rs6868456	0.82[EUR][1000 genomes]
rs6870288	0.89[EUR][1000 genomes]
rs6879369	0.82[EUR][1000 genomes]
rs73112867	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73115043	0.81[EUR][1000 genomes]
rs73763476	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027368	chr5:74759999-75663712	Active TSS Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv518475	chr5:74863041-75411804	Strong transcription Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	nsv830354	chr5:75074143-75259398	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:75165200-75165800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr5:75165200-75166000	Enhancers	HMEC	breast
3	chr5:75165200-75166200	Enhancers	NHEK	skin
4	chr5:75165400-75165800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr5:75165400-75166000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links