Variant report

Variant	rs2338682
Chromosome Location	chr15:31776004-31776005
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:31775112..31777688-chr15:31780214..31782887,2	K562	blood:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:48 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054147	chr15:31014507-31972706	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv542306	chr15:31014507-31972706	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	esv34100	chr15:31496514-31792591	Active TSS Enhancers ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
4	nsv903840	chr15:31589970-31800149	Weak transcription Transcr. at gene 5' and 3' Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
5	nsv1051589	chr15:31728004-31972706	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv542320	chr15:31728004-31972706	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv469633	chr15:31731003-31904613	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv482330	chr15:31731003-31904613	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv903844	chr15:31736091-31781988	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv1046271	chr15:31741255-31795961	Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv903845	chr15:31751664-31939001	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	esv1803983	chr15:31760986-31776503	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
13	esv1817856	chr15:31772875-31776398	Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
14	esv1798284	chr15:31772875-31776503	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
15	esv1840109	chr15:31772875-31776503	Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
16	esv1824097	chr15:31772875-31778703	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
17	nsv827281	chr15:31773227-31779565	Flanking Bivalent TSS/Enh Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
18	nsv827282	chr15:31773680-31778948	Weak transcription Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
19	esv3436746	chr15:31773760-31777958	Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
20	esv1822934	chr15:31773865-31776398	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
21	esv3324341	chr15:31774110-31777508	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
22	esv3388036	chr15:31774660-31777358	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
23	esv3438047	chr15:31775285-31777833	Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
24	nsv568802	chr15:31775390-31776177	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
25	esv11895	chr15:31775453-31776533	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
26	nsv568803	chr15:31775481-31776123	Bivalent Enhancer Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
27	nsv568804	chr15:31775481-31776177	Bivalent/Poised TSS Weak transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
28	nsv568805	chr15:31775481-31776289	Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
29	esv1810518	chr15:31775481-31776503	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
30	esv1816910	chr15:31775481-31776503	Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
31	esv1838907	chr15:31775481-31776503	Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
32	nsv568806	chr15:31775481-31776503	Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
33	nsv568807	chr15:31775500-31776123	Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
34	nsv568808	chr15:31775500-31776177	Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
35	nsv568809	chr15:31775500-31776289	Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
36	nsv568810	chr15:31775500-31776343	Bivalent Enhancer Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
37	nsv568811	chr15:31775500-31776450	Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
38	nsv568812	chr15:31775500-31776503	Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
39	nsv568814	chr15:31775602-31776177	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
40	nsv568815	chr15:31775602-31776289	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
41	nsv568816	chr15:31775602-31776450	Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
42	nsv568817	chr15:31775602-31776503	Bivalent/Poised TSS Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
43	esv1811144	chr15:31775602-31791836	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
44	nsv568818	chr15:31775656-31776289	Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
45	nsv568819	chr15:31775707-31776343	Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
46	nsv568820	chr15:31775707-31776503	ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
47	nsv568821	chr15:31775758-31776503	Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
48	nsv568822	chr15:31775819-31776503	Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:31765600-31779200	Weak transcription	Brain Angular Gyrus	brain
2	chr15:31766000-31776400	Weak transcription	Brain Hippocampus Middle	brain
3	chr15:31769000-31776400	Weak transcription	Brain Substantia Nigra	brain
4	chr15:31774600-31776600	Bivalent/Poised TSS	Thymus	Thymus
5	chr15:31775000-31777200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
6	chr15:31775200-31776400	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
7	chr15:31775200-31776400	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr15:31775200-31776400	Active TSS	Primary T helper cells PMA-I stimulated	--
9	chr15:31775200-31776400	Flanking Active TSS	Right Ventricle	heart
10	chr15:31775200-31776600	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
11	chr15:31775200-31776600	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr15:31775200-31776600	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr15:31775400-31776200	Active TSS	H9 Cell Line	embryonic stem cell
14	chr15:31775400-31776200	Active TSS	Sigmoid Colon	Sigmoid Colon
15	chr15:31775400-31776400	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
16	chr15:31775400-31776400	Active TSS	Primary T cells from cord blood	blood
17	chr15:31775400-31776400	Flanking Active TSS	Primary hematopoietic stem cells	blood
18	chr15:31775400-31776400	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
19	chr15:31775400-31776400	Active TSS	Primary T regulatory cells fromperipheralblood	blood
20	chr15:31775400-31776400	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr15:31775400-31776400	Bivalent/Poised TSS	Primary mononuclear cells fromperipheralblood	Blood
22	chr15:31775400-31776400	Bivalent/Poised TSS	Brain Germinal Matrix	brain
23	chr15:31775400-31776400	Active TSS	Fetal Brain Female	brain
24	chr15:31775400-31776400	Bivalent/Poised TSS	Psoas Muscle	Psoas
25	chr15:31775400-31776600	Active TSS	Primary B cells from cord blood	blood
26	chr15:31775400-31776600	Active TSS	Primary T helper naive cells fromperipheralblood	blood
27	chr15:31775400-31776600	Active TSS	Primary T helper cells fromperipheralblood	blood
28	chr15:31775400-31776600	Weak transcription	Brain Cingulate Gyrus	brain
29	chr15:31775400-31780400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr15:31775600-31776200	Transcr. at gene 5' and 3'	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr15:31775600-31776200	Active TSS	Small Intestine	intestine
32	chr15:31775600-31776600	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
33	chr15:31775600-31777000	Bivalent/Poised TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr15:31775800-31776200	Bivalent/Poised TSS	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr15:31775800-31776200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
36	chr15:31775800-31776200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
37	chr15:31775800-31776200	Weak transcription	Lung	lung
38	chr15:31775800-31776200	Active TSS	Ovary	ovary
39	chr15:31775800-31776400	Active TSS	Primary T killer naive cells fromperipheralblood	blood
40	chr15:31775800-31776400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
41	chr15:31775800-31776600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
42	chr15:31775800-31776600	Weak transcription	Brain Anterior Caudate	brain
43	chr15:31775800-31779000	Weak transcription	Brain Inferior Temporal Lobe	brain
44	chr15:31775800-31779600	Weak transcription	Rectal Mucosa Donor 31	rectum
45	chr15:31776000-31776200	Bivalent Enhancer	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr15:31776000-31776200	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr15:31776000-31776200	Bivalent/Poised TSS	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr15:31776000-31776200	Active TSS	Right Atrium	heart
49	chr15:31776000-31776200	Enhancers	Spleen	Spleen
50	chr15:31776000-31776400	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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