Variant report

Variant	rs2338961
Chromosome Location	chr8:78311815-78311816
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10081460	1.00[ASN][1000 genomes]
rs1399605	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2879305	1.00[ASN][1000 genomes]
rs4256583	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs71503443	0.92[ASN][1000 genomes]
rs7815888	1.00[ASN][1000 genomes]
rs7820260	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7822521	0.92[ASN][1000 genomes]
rs9643723	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs988772	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891045	chr8:77998659-78477561	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv891046	chr8:78265312-78311815	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv891047	chr8:78265312-78322329	Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv891048	chr8:78271372-78322329	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:78311200-78312000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr8:78311200-78312400	Active TSS	Fetal Muscle Trunk	muscle
3	chr8:78311200-78313800	Active TSS	Adipose Nuclei	Adipose
4	chr8:78311400-78312600	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr8:78311400-78315800	Active TSS	Fetal Muscle Leg	muscle
6	chr8:78311600-78312000	Flanking Active TSS	Liver	Liver
7	chr8:78311600-78312000	Flanking Active TSS	HepG2	liver
8	chr8:78311600-78314800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr8:78311800-78312000	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr8:78311800-78312600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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