Variant report

Variant	rs233906
Chromosome Location	chr6:132302791-132302792
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	6:132269655-132282174..6:132301703-132305703	Hela-S3	cervix:
2	6:132182612-132191683..6:132301703-132305703	GM12878	blood:

Variant related genes	Relation type
ENSG00000227220	Chromatin interaction
ENSG00000197594	Chromatin interaction
ENSG00000118523	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1475723	0.85[EUR][1000 genomes]
rs1930996	0.84[EUR][1000 genomes]
rs1930998	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs233908	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs233911	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs233917	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs233919	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9493153	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv7968	chr6:131917172-132321099	Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv470861	chr6:132291785-132351866	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv886672	chr6:132299748-132349215	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv886673	chr6:132299748-132363507	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	nsv427768	chr6:132300468-132398477	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132277400-132305600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr6:132296600-132304400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr6:132297000-132305400	Enhancers	Liver	Liver
4	chr6:132298000-132303000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr6:132298200-132302800	Weak transcription	Ovary	ovary
6	chr6:132298200-132319000	Weak transcription	Aorta	Aorta
7	chr6:132300400-132303800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr6:132300400-132304600	Enhancers	HUVEC	blood vessel
9	chr6:132300600-132303200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr6:132300600-132306600	Enhancers	Muscle Satellite Cultured Cells	--
11	chr6:132300800-132303200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr6:132300800-132304800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr6:132300800-132306000	Enhancers	Osteobl	bone
14	chr6:132300800-132307200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr6:132301000-132303200	Enhancers	HMEC	breast
16	chr6:132301000-132305000	Enhancers	NH-A	brain
17	chr6:132301000-132305000	Enhancers	NHDF-Ad	bronchial
18	chr6:132301000-132306200	Enhancers	HSMM	muscle
19	chr6:132301200-132303000	Enhancers	Duodenum Mucosa	Duodenum
20	chr6:132301200-132303000	Enhancers	Rectal Mucosa Donor 29	rectum
21	chr6:132301200-132305800	Enhancers	NHLF	lung
22	chr6:132301400-132302800	Enhancers	Fetal Kidney	kidney
23	chr6:132301400-132303000	Enhancers	Fetal Intestine Small	intestine
24	chr6:132301400-132303200	Enhancers	Small Intestine	intestine
25	chr6:132301400-132304000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr6:132301400-132304400	Enhancers	A549	lung
27	chr6:132301400-132304800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr6:132301600-132303000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr6:132301600-132303000	Enhancers	Sigmoid Colon	Sigmoid Colon
30	chr6:132301600-132303400	Enhancers	Stomach Mucosa	stomach
31	chr6:132301600-132303800	Enhancers	Rectal Mucosa Donor 31	rectum
32	chr6:132301600-132304000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr6:132301800-132303200	Enhancers	Fetal Intestine Large	intestine
34	chr6:132302000-132305400	Weak transcription	Rectal Smooth Muscle	rectum
35	chr6:132302200-132303000	Enhancers	Right Atrium	heart
36	chr6:132302400-132302800	Enhancers	HSMMtube	muscle
37	chr6:132302400-132303000	Flanking Active TSS	HepG2	liver
38	chr6:132302400-132304200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr6:132302600-132302800	Enhancers	Adipose Nuclei	Adipose
40	chr6:132302600-132303000	Enhancers	Left Ventricle	heart
41	chr6:132302600-132303200	Enhancers	Gastric	stomach

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