Variant report

Variant	rs233941
Chromosome Location	chr6:132319906-132319907
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs233937	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs233946	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4897555	0.85[CEU][hapmap]
rs511587	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7763896	0.85[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv7968	chr6:131917172-132321099	Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv470861	chr6:132291785-132351866	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv886672	chr6:132299748-132349215	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv886673	chr6:132299748-132363507	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	nsv427768	chr6:132300468-132398477	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv970350	chr6:132317890-132327515	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:132303000-132320600	Weak transcription	Left Ventricle	heart
2	chr6:132304800-132320600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr6:132306200-132321400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr6:132317600-132324400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr6:132317800-132320600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr6:132318000-132320600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr6:132318200-132320000	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr6:132318600-132320000	Enhancers	Sigmoid Colon	Sigmoid Colon
9	chr6:132318600-132320800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr6:132318800-132320000	Enhancers	A549	lung
11	chr6:132318800-132320800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr6:132318800-132324800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr6:132319200-132320000	Weak transcription	Fetal Stomach	stomach
14	chr6:132319200-132320400	Enhancers	HepG2	liver
15	chr6:132319200-132320800	Enhancers	Rectal Mucosa Donor 29	rectum
16	chr6:132319400-132321800	Enhancers	Fetal Heart	heart
17	chr6:132319600-132320800	Enhancers	HSMMtube	muscle
18	chr6:132319800-132320000	Enhancers	Aorta	Aorta
19	chr6:132319800-132320000	Enhancers	Psoas Muscle	Psoas
20	chr6:132319800-132320000	Enhancers	Rectal Mucosa Donor 31	rectum
21	chr6:132319800-132320200	Enhancers	Stomach Smooth Muscle	stomach
22	chr6:132319800-132320400	Enhancers	Brain Substantia Nigra	brain
23	chr6:132319800-132320600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr6:132319800-132320800	Enhancers	HSMM	muscle

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