Variant report

Variant	rs2341399
Chromosome Location	chr3:196247440-196247441
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:195965714..195968568-chr3:196245176..196247708,2	K562	blood:
2	chr3:195927182..195928702-chr3:196245885..196247775,2	K562	blood:
3	chr3:196247063..196249007-chr3:196250950..196253730,2	K562	blood:

Variant related genes	Relation type
ENSG00000161217	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11185544	0.92[CEU][hapmap];0.93[CHD][hapmap];0.87[TSI][hapmap];0.91[EUR][1000 genomes]
rs11707537	0.80[TSI][hapmap]
rs11714694	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12489885	0.94[EUR][1000 genomes]
rs12495687	0.88[CEU][hapmap]
rs13100782	0.81[ASN][1000 genomes]
rs1355533	0.87[CHD][hapmap]
rs2086891	0.92[CEU][hapmap];0.92[EUR][1000 genomes]
rs2101285	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2880030	0.80[CEU][hapmap];0.87[CHD][hapmap];0.85[TSI][hapmap]
rs3964310	0.92[EUR][1000 genomes]
rs55845468	0.92[ASN][1000 genomes]
rs62410572	0.81[ASN][1000 genomes]
rs6763760	0.92[ASN][1000 genomes]
rs6765975	0.82[EUR][1000 genomes]
rs6775794	0.81[EUR][1000 genomes]
rs6775806	0.82[EUR][1000 genomes]
rs6778889	0.88[CHB][hapmap];0.87[CHD][hapmap]
rs6780633	0.82[EUR][1000 genomes]
rs73219653	0.92[EUR][1000 genomes]
rs73219654	0.92[EUR][1000 genomes]
rs7615547	0.83[EUR][1000 genomes]
rs7623111	0.81[EUR][1000 genomes]
rs7633524	0.88[CHB][hapmap]
rs7648243	0.81[ASN][1000 genomes]
rs9311	0.80[CEU][hapmap];0.87[CHD][hapmap];0.82[TSI][hapmap]
rs9813420	0.84[CEU][hapmap]
rs9814342	0.80[CEU][hapmap];0.87[CHD][hapmap];0.87[TSI][hapmap]
rs9817377	0.84[CEU][hapmap];0.87[CHD][hapmap];0.91[TSI][hapmap]
rs9818507	0.83[EUR][1000 genomes]
rs9828786	0.80[CEU][hapmap]
rs9839388	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9840938	0.83[EUR][1000 genomes]
rs9848622	0.88[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003194	chr3:195960270-196342423	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv536894	chr3:195960270-196342423	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
3	nsv1003066	chr3:196098763-196414159	Flanking Active TSS Strong transcription Weak transcription Active TSS Enhancers Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
4	esv2752687	chr3:196147690-196286690	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
5	nsv948681	chr3:196148055-197007546	Weak transcription Strong transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
6	nsv1010483	chr3:196210054-196319543	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
7	nsv536896	chr3:196210054-196319543	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
8	nsv1014692	chr3:196242249-196531824	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
9	esv2763750	chr3:196242261-196278366	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
10	nsv878187	chr3:196245603-196554790	Enhancers ZNF genes & repeats Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:196244800-196247600	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
2	chr3:196245600-196247600	ZNF genes & repeats	Adipose Nuclei	Adipose
3	chr3:196245600-196247600	ZNF genes & repeats	Duodenum Mucosa	Duodenum
4	chr3:196245800-196247600	ZNF genes & repeats	Brain Hippocampus Middle	brain
5	chr3:196246400-196248200	Weak transcription	K562	blood

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