Variant report

Variant	rs2341845
Chromosome Location	chr2:151887451-151887452
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:151884261..151886924-chr2:151887279..151889141,2	MCF-7	breast:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10172940	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10175171	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10177702	0.82[EUR][1000 genomes]
rs10178050	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10184969	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10187633	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10187955	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1019034	0.87[EUR][1000 genomes]
rs10195869	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10201074	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1024553	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10497072	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10497074	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12478205	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1385422	0.94[EUR][1000 genomes]
rs1465234	0.83[EUR][1000 genomes]
rs1485093	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1485094	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1485102	0.94[EUR][1000 genomes]
rs1548633	0.82[EUR][1000 genomes]
rs1994257	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1994258	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2079453	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2341844	0.94[EUR][1000 genomes]
rs4664216	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4664874	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4664885	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6433104	0.94[EUR][1000 genomes]
rs6709096	0.94[EUR][1000 genomes]
rs7572164	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7572404	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7581655	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7585828	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7597842	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs989414	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525350	chr2:151711700-152044794	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv523849	chr2:151718133-152143524	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	esv3693426	chr2:151725792-152295862	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	nsv1002140	chr2:151833257-152054910	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:151879200-151888400	Weak transcription	Fetal Stomach	stomach
2	chr2:151883800-151888800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr2:151884000-151888800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr2:151884000-151889400	Weak transcription	Fetal Heart	heart
5	chr2:151885600-151888600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr2:151886400-151889000	Weak transcription	Fetal Lung	lung
7	chr2:151886800-151888600	Weak transcription	NHLF	lung
8	chr2:151886800-151888800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr2:151886800-151888800	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr2:151886800-151889200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr2:151887200-151887600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr2:151887200-151888400	Weak transcription	NHDF-Ad	bronchial
13	chr2:151887200-151888800	Weak transcription	Osteobl	bone
14	chr2:151887400-151888800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr2:151887400-151889200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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