Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10842632	0.84[EUR][1000 genomes]
rs11048327	0.84[EUR][1000 genomes]
rs11048332	0.84[EUR][1000 genomes]
rs11048333	0.96[CEU][hapmap];0.83[EUR][1000 genomes]
rs11048334	0.83[EUR][1000 genomes]
rs11048335	0.91[CEU][hapmap]
rs1167753	0.88[ASN][1000 genomes]
rs1167754	0.89[ASN][1000 genomes]
rs1185614	0.87[ASN][1000 genomes]
rs12816906	0.96[CEU][hapmap];0.84[EUR][1000 genomes]
rs12817333	0.96[CEU][hapmap];0.84[TSI][hapmap];0.83[EUR][1000 genomes]
rs1488822	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34878109	0.84[EUR][1000 genomes]
rs61915188	0.88[ASN][1000 genomes]
rs706498	0.87[ASN][1000 genomes]
rs706499	0.87[ASN][1000 genomes]
rs706500	0.87[ASN][1000 genomes]
rs706503	0.88[ASN][1000 genomes]
rs706504	0.89[ASN][1000 genomes]
rs706507	0.89[ASN][1000 genomes]
rs706511	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758300	chr12:25992331-26161116	Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	38 gene(s)	inside rSNPs	diseases
2	esv2759886	chr12:25992331-26161116	Enhancers Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	38 gene(s)	inside rSNPs	diseases
3	nsv1035319	chr12:26020667-26097148	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
4	nsv528977	chr12:26033286-26034653	Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:26028600-26034800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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