Variant report

Variant	rs2345902
Chromosome Location	chr2:153199435-153199436
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:153197976..153200865-chr2:153202322..153203907,3	MCF-7	breast:
2	chr2:153193156..153194815-chr2:153197354..153200252,2	MCF-7	breast:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10497096	0.82[CEU][hapmap]
rs10497100	1.00[CEU][hapmap];0.93[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.80[EUR][1000 genomes]
rs10931062	0.80[EUR][1000 genomes]
rs12185697	0.80[EUR][1000 genomes]
rs12614451	0.82[CEU][hapmap];0.87[TSI][hapmap]
rs13003831	0.82[CEU][hapmap]
rs13004494	1.00[CEU][hapmap];0.93[GIH][hapmap];1.00[MEX][hapmap];0.87[TSI][hapmap];0.85[EUR][1000 genomes]
rs13005848	0.90[EUR][1000 genomes]
rs13008702	0.82[CEU][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap]
rs13022422	0.80[EUR][1000 genomes]
rs13023506	0.80[EUR][1000 genomes]
rs13023659	0.80[EUR][1000 genomes]
rs13029981	0.90[EUR][1000 genomes]
rs16830853	0.82[CEU][hapmap]
rs16830878	0.90[EUR][1000 genomes]
rs16830885	0.90[EUR][1000 genomes]
rs16830964	1.00[CEU][hapmap];0.93[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.85[EUR][1000 genomes]
rs16830971	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs16830977	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs16831007	1.00[CEU][hapmap];0.93[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs16831009	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs16831018	1.00[CEU][hapmap];0.93[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs16831034	1.00[CEU][hapmap]
rs34104978	0.90[EUR][1000 genomes]
rs34288092	0.90[EUR][1000 genomes]
rs34581620	0.80[EUR][1000 genomes]
rs35403838	0.85[EUR][1000 genomes]
rs35589946	0.80[EUR][1000 genomes]
rs35886923	0.84[EUR][1000 genomes]
rs35937195	0.85[EUR][1000 genomes]
rs4664101	0.83[EUR][1000 genomes]
rs4664104	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs4664107	1.00[CEU][hapmap];0.93[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs4664571	0.82[EUR][1000 genomes]
rs4664574	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs57720755	0.80[EUR][1000 genomes]
rs73967829	0.80[EUR][1000 genomes]
rs73967831	0.80[EUR][1000 genomes]
rs73970604	0.85[EUR][1000 genomes]
rs7573890	1.00[CEU][hapmap];0.93[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.80[EUR][1000 genomes]
rs7588008	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs7602756	0.85[EUR][1000 genomes]
rs7602975	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs7606289	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs7606397	1.00[CEU][hapmap];0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3693434	chr2:152998467-153208713	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv834419	chr2:153179420-153381476	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:153193800-153211000	Weak transcription	HSMMtube	muscle
2	chr2:153194000-153200000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr2:153194000-153200200	Weak transcription	Fetal Intestine Large	intestine
4	chr2:153194000-153201200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr2:153194000-153203600	Weak transcription	Osteobl	bone
6	chr2:153194000-153206600	Weak transcription	Pancreas	Pancrea
7	chr2:153194200-153224400	Weak transcription	Aorta	Aorta
8	chr2:153194400-153200600	Weak transcription	NHDF-Ad	bronchial
9	chr2:153194400-153201200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr2:153194400-153202800	Weak transcription	Fetal Intestine Small	intestine
11	chr2:153194600-153199600	Weak transcription	Fetal Muscle Leg	muscle
12	chr2:153194600-153200200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr2:153194600-153200600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr2:153194600-153200600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr2:153194600-153204200	Weak transcription	Stomach Smooth Muscle	stomach
16	chr2:153194600-153205800	Weak transcription	Left Ventricle	heart
17	chr2:153194600-153206200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr2:153194600-153206400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr2:153194600-153206400	Weak transcription	Lung	lung
20	chr2:153194600-153206600	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr2:153194600-153210400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr2:153194600-153210400	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr2:153194600-153214600	Weak transcription	Gastric	stomach
24	chr2:153194800-153203800	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr2:153195000-153200800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
26	chr2:153195000-153204600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr2:153195400-153200000	Weak transcription	HUES6 Cell Line	embryonic stem cell
28	chr2:153196000-153199600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr2:153196000-153200800	Weak transcription	HUES64 Cell Line	embryonic stem cell
30	chr2:153196000-153224800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
31	chr2:153196200-153200600	Weak transcription	HUES48 Cell Line	embryonic stem cell
32	chr2:153196200-153200800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
33	chr2:153196200-153204200	Weak transcription	Fetal Brain Female	brain
34	chr2:153196600-153202400	Strong transcription	NHEK	skin
35	chr2:153196600-153211800	Weak transcription	Small Intestine	intestine
36	chr2:153196800-153199800	Weak transcription	Fetal Stomach	stomach
37	chr2:153196800-153203200	Weak transcription	HMEC	breast
38	chr2:153197000-153201600	Weak transcription	Duodenum Smooth Muscle	Duodenum
39	chr2:153197000-153207200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr2:153197400-153200400	Enhancers	Placenta	Placenta
41	chr2:153197800-153204800	Weak transcription	Skeletal Muscle Male	skeletal muscle
42	chr2:153197800-153204800	Weak transcription	Skeletal Muscle Female	skeletal muscle
43	chr2:153198000-153205800	Weak transcription	Cortex derived primary cultured neurospheres	brain
44	chr2:153198000-153206200	Weak transcription	Fetal Brain Male	brain
45	chr2:153198000-153206200	Genic enhancers	HepG2	liver
46	chr2:153198000-153207400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr2:153198200-153200400	Weak transcription	Brain Anterior Caudate	brain
48	chr2:153198200-153214000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
49	chr2:153198400-153200200	Weak transcription	Adipose Nuclei	Adipose
50	chr2:153198600-153200800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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