Variant report
| Variant | rs2346197 |
|---|---|
| Chromosome Location | chr2:153187573-153187574 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:2)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:2 , 50 per page) page:
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| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | STAT3 | chr2:153187371-153187647 | MCF10A-Er-Src | breast: | n/a | chr2:153187495-153187506 |
| 2 | FOS | chr2:153187401-153187622 | MCF10A-Er-Src | breast: | n/a | n/a |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| FMNL2 | TF binding region |
| ENSG00000157827 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs10171232 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs10181910 | 1.00[EUR][1000 genomes] |
| rs10188437 | 1.00[EUR][1000 genomes] |
| rs10203197 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12693278 | 1.00[EUR][1000 genomes] |
| rs13394982 | 1.00[EUR][1000 genomes] |
| rs13408985 | 0.90[EUR][1000 genomes] |
| rs13420003 | 1.00[EUR][1000 genomes] |
| rs35406869 | 1.00[EUR][1000 genomes] |
| rs4605323 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4664099 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6433928 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6433967 | 0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6722815 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6726207 | 1.00[EUR][1000 genomes] |
| rs6742020 | 0.82[EUR][1000 genomes] |
| rs6742139 | 1.00[EUR][1000 genomes] |
| rs6760070 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73002837 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7590270 | 1.00[EUR][1000 genomes] |
| rs7604840 | 1.00[EUR][1000 genomes] |
| rs7607862 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9288076 | 1.00[EUR][1000 genomes] |
| rs9288079 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3693434 | chr2:152998467-153208713 | Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 18 gene(s) | inside rSNPs | diseases |
| 2 | nsv834419 | chr2:153179420-153381476 | Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:153187000-153191200 | Weak transcription | Foreskin Fibroblast Primary Cells skin02 | Skin |
