Variant report

Variant	rs2346877
Chromosome Location	chr2:46892958-46892959
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:46891488..46894291-chr2:46897484..46899463,3	K562	blood:
2	chr2:46891705..46893482-chr2:46919094..46921446,2	K562	blood:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1004147	0.95[ASN][1000 genomes]
rs10178013	0.95[ASN][1000 genomes]
rs10180473	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1319499	1.00[CEU][hapmap];0.81[CHB][hapmap];0.93[EUR][1000 genomes]
rs1466268	0.95[ASN][1000 genomes]
rs1531132	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1563401	0.95[ASN][1000 genomes]
rs1563407	0.80[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs1902322	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1975780	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4355163	0.87[EUR][1000 genomes]
rs6734725	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs897532	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs930853	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014425	chr2:46670179-47033417	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv535678	chr2:46670179-47033417	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv873996	chr2:46670941-47065227	Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
4	nsv1009735	chr2:46724523-46913152	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
5	nsv533112	chr2:46800828-46959977	Enhancers Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
6	nsv817517	chr2:46819371-47715140	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	152 gene(s)	inside rSNPs	diseases
7	nsv873997	chr2:46821640-46984627	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:46884400-46896400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr2:46885200-46893000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr2:46889000-46896800	Enhancers	Fetal Muscle Leg	muscle
4	chr2:46889200-46896400	Enhancers	Colon Smooth Muscle	Colon
5	chr2:46889600-46898200	Enhancers	Fetal Stomach	stomach
6	chr2:46890200-46893200	Weak transcription	Fetal Kidney	kidney
7	chr2:46890200-46896400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr2:46890400-46894400	Weak transcription	Aorta	Aorta
9	chr2:46890400-46897000	Enhancers	Rectal Smooth Muscle	rectum
10	chr2:46890800-46893000	Weak transcription	NHDF-Ad	bronchial
11	chr2:46891200-46895800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr2:46891200-46896400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr2:46891200-46896600	Weak transcription	HSMMtube	muscle
14	chr2:46891400-46893400	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr2:46891400-46898400	Weak transcription	Psoas Muscle	Psoas
16	chr2:46891600-46893400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr2:46891600-46893400	Weak transcription	Right Atrium	heart
18	chr2:46891600-46896400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr2:46891800-46893000	Weak transcription	Fetal Heart	heart
20	chr2:46891800-46894600	Enhancers	Stomach Smooth Muscle	stomach
21	chr2:46891800-46895000	Weak transcription	Right Ventricle	heart
22	chr2:46891800-46896400	Weak transcription	Left Ventricle	heart
23	chr2:46892000-46895400	Enhancers	Fetal Lung	lung
24	chr2:46892000-46896000	Enhancers	Ovary	ovary
25	chr2:46892400-46893200	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr2:46892600-46894600	Enhancers	Fetal Muscle Trunk	muscle
27	chr2:46892800-46898400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links